Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20j02
         (607 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0519 - 16745098-16745150,16745368-16745608,16745733-167458...    29   3.8  
06_03_0796 - 24690115-24690247,24690622-24690808,24691060-246912...    28   6.6  
01_07_0217 + 42072475-42072915                                         28   6.6  

>04_03_0519 -
           16745098-16745150,16745368-16745608,16745733-16745804,
           16745982-16746050,16746883-16746948,16747143-16747313,
           16747392-16747508
          Length = 262

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +3

Query: 243 NIKMASPNPEIDLSSMFISKVNNSKSPTRSEPTSRRNSTVKSSLPAEIITVKDF 404
           ++K+A+ NP++D  S ++   + S  P  + P+S   +T   S      T   F
Sbjct: 144 SMKLATMNPQLDFDSHYMPSKDMSHMPVPAYPSSDPTTTTAFSYTGSPATADPF 197


>06_03_0796 -
           24690115-24690247,24690622-24690808,24691060-24691222,
           24691503-24691688,24692005-24692174,24692648-24692774
          Length = 321

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +3

Query: 387 ITVKDFFDFMKTAYQVYEYLEG--DEDDGSKIDWEELTKLTVLNHVIEQQERD 539
           I V D  + +KT Y  Y Y +   D ++ +   +E+L KL      IE+  RD
Sbjct: 257 IRVSDMINILKTLYPTYTYPKNFVDVEENTIYSFEKLQKLGWSFRPIEETLRD 309


>01_07_0217 + 42072475-42072915
          Length = 146

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 453 DEDDGSKIDWEELTKLTVLNHVIEQQERDLLLQTAF 560
           D DD   +D EE TKL V   + +++ER   L  AF
Sbjct: 53  DTDDDGLLDEEEFTKLAVQLEMGDEEERCRGLMEAF 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,009,404
Number of Sequences: 37544
Number of extensions: 196712
Number of successful extensions: 568
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)