Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20i22
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80847-4|AAB37986.1|  112|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF016677-2|AAB66146.1|  292|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z81575-7|CAB04638.1|  367|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AC006832-7|AAF39999.1|  505|Caenorhabditis elegans Hypothetical ...    28   7.4  
U70857-7|AAB09170.1|  208|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U42842-2|AAA83592.3|  341|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>U80847-4|AAB37986.1|  112|Caenorhabditis elegans Hypothetical
           protein C17H11.5 protein.
          Length = 112

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +3

Query: 186 CRSNVDFVVLEFSSELNVCR--KVL*LLWFEQKRIESFTIPRMYVCVRMRNIKYN 344
           C  N D  ++EFS  +  CR   +    W + +RI   +I  M V  RM+  KYN
Sbjct: 25  CPENDDGAIIEFSVAMETCRYDYMTIKYWLDYQRI---SIAAMKVYDRMKREKYN 76


>AF016677-2|AAB66146.1|  292|Caenorhabditis elegans Hypothetical
           protein ZK1240.5 protein.
          Length = 292

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +3

Query: 309 YVCVRMRN--IKYNSYEWRKRTGIHFVADDLRALSPK 413
           +VC++     I + +YEW+K +  HF+ +D   L  K
Sbjct: 99  FVCIKKNFFLIDFQNYEWQKLSNCHFLTEDYCPLKNK 135


>Z81575-7|CAB04638.1|  367|Caenorhabditis elegans Hypothetical
           protein R08H2.8 protein.
          Length = 367

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 410 WRQRS*IVGNKMYTSSFAPFVRIIFNV 330
           W+ R  IV N  YT+S  PF+ +I+ V
Sbjct: 294 WKNRK-IVSNTTYTASNRPFINLIYEV 319


>AC006832-7|AAF39999.1|  505|Caenorhabditis elegans Hypothetical
           protein ZK355.5 protein.
          Length = 505

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
 Frame = +1

Query: 334 LNIILTNGAKELVYI--LLPTIYERC 405
           +NII ++G + ++Y   LLPT YERC
Sbjct: 435 MNIISSSGQQAVIYDNQLLPTDYERC 460


>U70857-7|AAB09170.1|  208|Caenorhabditis elegans Hypothetical
           protein C10G8.2 protein.
          Length = 208

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/24 (37%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +2

Query: 359 QKNWYTFCC-RRFTSVVAKILHYE 427
           QK +++FCC +++  ++  IL+YE
Sbjct: 175 QKKYFSFCCKKKYNLLIKDILYYE 198


>U42842-2|AAA83592.3|  341|Caenorhabditis elegans Hypothetical
           protein EGAP2.1 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = -1

Query: 390 RRQQNVYQFFCAIRKNYI*CSACEHRHTSW-----ES*KTQFSFV 271
           RR++N Y++ C  +     CS+C  +  SW      S KT FSF+
Sbjct: 105 RRRKNCYEWRCRTKDKRGDCSSCSIKFGSWFEYTKLSFKTIFSFL 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,754,676
Number of Sequences: 27780
Number of extensions: 329824
Number of successful extensions: 774
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)