Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20i18
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099922-1|AAK21410.2|  509|Caenorhabditis elegans Hypothetical ...    29   3.1  
U64845-5|AAC48027.1|  581|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z92781-2|CAB07181.2|  397|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>AF099922-1|AAK21410.2|  509|Caenorhabditis elegans Hypothetical
           protein F56F11.5 protein.
          Length = 509

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -2

Query: 227 KVYRTYIIEKSERGNHIEG*KAVCFKRHLSLYLKVFFI*Y*AYFHC 90
           K YR YIIEKS+R   I    A+ +K    ++  ++ I + AY  C
Sbjct: 214 KSYRDYIIEKSQRSLEI---MAIAYKAKAMIFRLIYIILF-AYMLC 255


>U64845-5|AAC48027.1|  581|Caenorhabditis elegans Hypothetical
           protein F45F2.6 protein.
          Length = 581

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/48 (22%), Positives = 24/48 (50%)
 Frame = -1

Query: 390 HIISTFYTSAISAILPIIIHYSQADAFSTCPVYKMALLTSYNYKLNKH 247
           H +S+ Y++ ++   P+++ Y    +     ++K A    YN+  N H
Sbjct: 525 HKMSSVYSALLNISSPLVVFYRFHSSACLAEIWKHAYSKKYNHSHNAH 572


>Z92781-2|CAB07181.2|  397|Caenorhabditis elegans Hypothetical
           protein F09C3.3 protein.
          Length = 397

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -3

Query: 475 RWRHSSKWKDLNNSTVKYHTSLRLKLLHSYNFHFLH*RYFGDTSNNNSLF 326
           RWR + K++ +   T++      L LLH    H L  +   D  + N +F
Sbjct: 113 RWRVAEKYRKMPKITLRKLIEHLLVLLHLPKIHVLSFKNMSDLQSINEIF 162


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,282,068
Number of Sequences: 27780
Number of extensions: 280848
Number of successful extensions: 579
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)