Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20i16
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0170 - 1174224-1174321,1174429-1174588,1174673-1174823,117...    62   3e-10
02_02_0175 - 7465951-7466019,7466410-7466492,7467126-7467289,746...    31   0.64 
05_01_0228 + 1692117-1692924,1693321-1693431,1693536-1693675,169...    31   1.1  
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324...    31   1.1  
06_01_0789 - 5901888-5902940,5903685-5903824,5904606-5904665,590...    30   2.0  
11_01_0656 - 5301048-5301441,5301779-5301976,5302056-5302228,530...    29   3.4  
04_03_0021 - 9548600-9548794,9548851-9549006                           28   7.9  

>02_01_0170 -
           1174224-1174321,1174429-1174588,1174673-1174823,
           1175005-1175156,1175647-1175768,1176773-1176785
          Length = 231

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 27/89 (30%), Positives = 52/89 (58%)
 Frame = +1

Query: 388 EKLRQQKLQEESDLRLAMETFGVTEGNIGKLDNFHPTTKEEYTEFADLLTKKITFYKAKD 567
           EKLRQQ+L EE+D +   E FG  +G+   LD F P ++ ++ E+A+L+  K+  Y+   
Sbjct: 90  EKLRQQRLVEEADFKSTTELFGKKDGSEKSLDTFIPKSESDFAEYAELIANKLRPYEKSF 149

Query: 568 EFPGFIDDLVKNILVQMSSADIRRIKLTV 654
            + G + ++++  +  +  AD + I  ++
Sbjct: 150 HYMGLLKNVMRLSMASLKGADAKDISSSI 178


>02_02_0175 -
           7465951-7466019,7466410-7466492,7467126-7467289,
           7467385-7467640,7467830-7467935,7467962-7468007,
           7468316-7468388,7468508-7468577
          Length = 288

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
 Frame = +1

Query: 343 TEKTAEEMTPEQKLAEK--LRQQKLQEES-DLRLAMETFGVTEGNIGKLDNFHPTTKEEY 513
           TEK  E  T  QK+A+K  L +Q+++  S D +   E F        KLD  +   + EY
Sbjct: 141 TEKLEEVHTAYQKMAKKCQLMEQEVENLSRDKQELQEKFAEKSRQKRKLDEMYDQLRSEY 200

Query: 514 TEFADLLTKKITFYKAKDEFPGFIDDLVKNILVQMSSAD 630
                   K+     A + FP    DL   +   M S+D
Sbjct: 201 ES-----AKRSAIQPANNYFPRAQPDLFSGVPNIMDSSD 234


>05_01_0228 +
           1692117-1692924,1693321-1693431,1693536-1693675,
           1693865-1694075,1694148-1694415,1694543-1694696,
           1694795-1695123,1695748-1695835
          Length = 702

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -3

Query: 482 SSLPMLPSVTPKVSMASRKSDSSCSFCWRSFSANFCSGVISSA 354
           SS   LPSV+P+V  A++        CWRS +A  C+  +++A
Sbjct: 191 SSASALPSVSPRVYAAAQ--------CWRSLNATACAACVATA 225


>03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,
            3242494-3242836,3244138-3248540,3248928-3249107,
            3249108-3250892,3251055-3252173
          Length = 2727

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
 Frame = +1

Query: 337  LVTEKTAEEM-TPEQKLAEK-----LRQQKLQEESDLRLAMETFGVTEGNI 471
            L  EK  E+M T EQKLA+K       Q  LQ+E   R+ +ET  ++ GN+
Sbjct: 1136 LELEKAEEKMQTMEQKLADKNEMVDFLQLSLQDEGKKRVEVETALISSGNL 1186


>06_01_0789 -
           5901888-5902940,5903685-5903824,5904606-5904665,
           5904794-5904854
          Length = 437

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/43 (32%), Positives = 27/43 (62%)
 Frame = +1

Query: 355 AEEMTPEQKLAEKLRQQKLQEESDLRLAMETFGVTEGNIGKLD 483
           ++ +T +  L ++L   ++QEESDLR+ ++ F     ++ KLD
Sbjct: 107 SKSLTSKLYLKQQLYGLQMQEESDLRMHVDVFNQLIVDLSKLD 149


>11_01_0656 -
           5301048-5301441,5301779-5301976,5302056-5302228,
           5302691-5302935,5303014-5303191,5303578-5303760,
           5303858-5303962,5304621-5304758,5304846-5305802
          Length = 856

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +1

Query: 469 IGKLDNFHPTTKEEYTEFADLLTKKITF---YKAKDEFPGFIDDLVKNIL 609
           +G LD F P    EY  F D + K       YK KDE   F+ D+ +  L
Sbjct: 552 MGDLDAFFPAATREYAPFVDEMWKDPAIQATYKRKDEL-HFLPDVAEYFL 600


>04_03_0021 - 9548600-9548794,9548851-9549006
          Length = 116

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = +1

Query: 352 TAEEMTPEQKLAEKLRQQKLQEESDLRLAMETFGVTEGNIGKLDNFHPTTKE 507
           T +++TPEQK   + RQ  + +   ++L  +  G +    G++     +T +
Sbjct: 39  TLDKLTPEQKKDLETRQGTIVQRYKMKLVADVAGTSSSKDGEIQQVSDSTTQ 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.134    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,694,314
Number of Sequences: 37544
Number of extensions: 253424
Number of successful extensions: 820
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)