Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20i12
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    28   1.2  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    26   4.7  
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar...    25   8.3  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    25   8.3  

>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = +1

Query: 511  ETKNSPESCSVYEIGSEQFFVNVDNSSNLVPVTDQYVLPEGDSNLFTNNYLLQTDYSTNN 690
            E   S  + ++Y  GSE F   +   S  +P T + +LP   + ++T        YS+++
Sbjct: 934  EPSGSTVTSTIYS-GSESFTTTLAVGSGTIPGTVEVILP-APTTIYTGTVATTITYSSSS 991

Query: 691  DP 696
             P
Sbjct: 992  TP 993


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 19/44 (43%), Positives = 26/44 (59%)
 Frame = -2

Query: 484 VSILGMFHHLGLQKIGQAQLLIPLNLTA*IRSLQIICFYPFWLT 353
           +SI G+F  LGL       LLIP+++T  + SL I  F  +WLT
Sbjct: 86  ISIPGIFVFLGLYVPFVVTLLIPIDVTWDV-SLSIWRFL-YWLT 127


>SPAC17C9.10 |stm1||G-protein coupled receptor
           Stm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = -1

Query: 446 KNWPGTATD--SVEFDCINS*PSNNLFLSILVNDMAKFTNKLISQPPPYYYNIFCNCFLD 273
           KN    +T+  S+ F  + S  + +   SILV   + + N   +  P +    F   FLD
Sbjct: 199 KNHKAKSTEGLSIIFFVLASVGNTSYAFSILVFPASDYLNYTYANLP-WILGAFSTIFLD 257

Query: 272 ILIFY 258
           I IFY
Sbjct: 258 IYIFY 262


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 328 NLFVNFAISLTKMDKNKLFEGYEFMQSNSTESVAVPGQ 441
           N F+    S T++D+N +F G     +N  +  +V G+
Sbjct: 479 NFFLTLYQSFTEVDENSIFNGVFETLNNDVDDESVIGE 516


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,953,670
Number of Sequences: 5004
Number of extensions: 62290
Number of successful extensions: 149
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)