Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20i12
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   0.55 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.9  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.1  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -1

Query: 380 NLFLSILVNDMAKFTNKLISQPPPYYYNIFCNCFLDILIFYSKNCF 243
           N  ++I+   +   T K++ +PP  Y   FC   ++   F  + CF
Sbjct: 116 NYEVTIMTKAILHHTGKVVWKPPAIY-KSFCEIDVEYFPFDEQTCF 160



 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 221 KEPAV*KLNCQIDNDRYLFSSQ 156
           K PA+ K  C+ID + + F  Q
Sbjct: 136 KPPAIYKSFCEIDVEYFPFDEQ 157


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 221 KEPAV*KLNCQIDNDRYLFSSQ 156
           K PA+ K +C+ID + + F  Q
Sbjct: 144 KPPAIYKSSCEIDVEYFPFDEQ 165


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 221 KEPAV*KLNCQIDNDRYLFSSQ 156
           K PA+ K +C+ID + + F  Q
Sbjct: 140 KPPAIYKSSCEIDVEYFPFDEQ 161


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 187 LTMTDICFRLNFYQLCTYVQD 125
           +T T   +RL  Y  C Y +D
Sbjct: 31  ITSTSALYRLKLYLFCDYDRD 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,490
Number of Sequences: 438
Number of extensions: 4847
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)