Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20i07
         (251 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo...    24   2.7  
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    23   8.2  
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos...    23   8.2  

>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 24.2 bits (50), Expect = 2.7
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 119 STRLLICSRNYRDVPKIVTSSLLCLVVRHCDTK*QNK 9
           S  L +C+  Y    K   S+LLC +V  C  +  NK
Sbjct: 291 SLALAVCNAQYSFPRKHPYSTLLCEIVEACLQREPNK 327


>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 22  FVSQCLTTRHSNEDVTIFGTSL*FREQINKRVLAFS 129
           F SQC T ++  E+VT    S     +IN+   A S
Sbjct: 381 FFSQCETVKNELENVTTTPNSTEAFSEINEYASALS 416


>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
           Mms2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 137 LHVEKASTRLLICSRNYRDVPKIVT 63
           +H  +  +  + C  NY D P IVT
Sbjct: 52  VHENRIYSLKIHCDANYPDAPPIVT 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,052,752
Number of Sequences: 5004
Number of extensions: 17842
Number of successful extensions: 34
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 47431474
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)