Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20i01
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical p...    33   0.19 
AC199172-3|ABO33274.1|  306|Caenorhabditis elegans F-box a prote...    29   3.0  
Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z81467-6|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z74028-2|CAA98428.1| 1058|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AF068717-3|AAC17762.2|  361|Caenorhabditis elegans Serpentine re...    27   9.3  

>Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical
           protein F25H2.5 protein.
          Length = 153

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +1

Query: 475 NVQSTFAMIKP--IAPSEHGKIITFIMKNDFRIVRMKNGKICKEFAMELYQSIASNNMLP 648
           N + TF  IKP  +     GKII    +  +++V +K     K      YQ +      P
Sbjct: 3   NTERTFIAIKPDGVHRGLVGKIIARFEERGYKLVALKQMTASKAHLEVHYQDLKDKPFFP 62

Query: 649 IIIDYVTTG 675
            +I+Y+++G
Sbjct: 63  SLIEYMSSG 71


>AC199172-3|ABO33274.1|  306|Caenorhabditis elegans F-box a protein
           protein 31 protein.
          Length = 306

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = +1

Query: 166 LLLPNINRLISIAMVYDYFDKYSFLCEMYDEDAD-EIKDLTLNYFPFDNSVQIIDAKKGK 342
           +LL N+++L  +       +  +FL  +  E+ +  +  +TLN+F FD+ + I+     K
Sbjct: 105 ILLKNVSKLYILRKERYRHNTVNFLVNVLKEEVNIHVDTITLNHFSFDDVLLILPLFNCK 164

Query: 343 NVLKRVQL 366
             LK++ L
Sbjct: 165 -TLKKISL 171


>Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical protein
            F26H9.8 protein.
          Length = 1377

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
 Frame = +1

Query: 262  ADEIKDLTLNYFPFDNSVQI-IDAKKGKNV---LKRVQLPPLNLDMLQIGNIVN 411
            ADE K +T++  P +N +QI +D+  GK V   ++ +  P  + D L I +++N
Sbjct: 1023 ADEHKIVTIDSIPVENDIQIVVDSFSGKWVELSVEELTEPKESDDELSIESLLN 1076


>Z81467-6|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical protein
            F26H9.8 protein.
          Length = 1377

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
 Frame = +1

Query: 262  ADEIKDLTLNYFPFDNSVQI-IDAKKGKNV---LKRVQLPPLNLDMLQIGNIVN 411
            ADE K +T++  P +N +QI +D+  GK V   ++ +  P  + D L I +++N
Sbjct: 1023 ADEHKIVTIDSIPVENDIQIVVDSFSGKWVELSVEELTEPKESDDELSIESLLN 1076


>Z74028-2|CAA98428.1| 1058|Caenorhabditis elegans Hypothetical
           protein C14C10.4 protein.
          Length = 1058

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 20/75 (26%), Positives = 35/75 (46%)
 Frame = +1

Query: 262 ADEIKDLTLNYFPFDNSVQIIDAKKGKNVLKRVQLPPLNLDMLQIGNIVNIFSKLLYIKD 441
           A ++ +L      F N V+ +     K V+ +  L   N D+  + N++     + + KD
Sbjct: 691 ATDVNELLKELSNFSNDVKEVVVLSLKRVILQKALTEQNDDLDFLVNVLE--HSIEWKKD 748

Query: 442 CAPATRKTLFKNVQS 486
             P   KTL KN++S
Sbjct: 749 NCPGYLKTLCKNLES 763


>AF068717-3|AAC17762.2|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein142 protein.
          Length = 361

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 18/85 (21%), Positives = 37/85 (43%)
 Frame = +1

Query: 400 NIVNIFSKLLYIKDCAPATRKTLFKNVQSTFAMIKPIAPSEHGKIITFIMKNDFRIVRMK 579
           N   + S  LYI D      + + K V    AM+  I P     ++TF++  +     + 
Sbjct: 194 NPKGVLSYYLYISDLFERNNEVILKYVTLVNAMVSNIIPCFLFPVVTFLLVKELWKNEIN 253

Query: 580 NGKICKEFAMELYQSIASNNMLPII 654
            G++    + ++  SI S  ++ ++
Sbjct: 254 RGRLLS--SKKVNDSIKSTQLVLLL 276


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,689,992
Number of Sequences: 27780
Number of extensions: 300536
Number of successful extensions: 923
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)