Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20h24
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po...    29   0.41 
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   2.2  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    27   2.9  
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   3.8  

>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 16/66 (24%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
 Frame = +3

Query: 204 KSGEIPDSSMPITLDNIK---AKLKESGIFDWQDASLNDRERKELSKLFDAVEIMPPNVQ 374
           K  ++PDS +   L NI+   +   ++ I DW+  + N++ + +++   ++ +I+P  VQ
Sbjct: 82  KPSQLPDSGLNYGL-NIRVASSSAADNEIVDWKANNSNEKAQNKIATNKESTDILPEEVQ 140

Query: 375 NMFSTL 392
            + + L
Sbjct: 141 LVLNDL 146


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/48 (22%), Positives = 28/48 (58%)
 Frame = +3

Query: 324 ELSKLFDAVEIMPPNVQNMFSTLRLVERVVKKQLKEGQISESLAGKFQ 467
           +L +L+D++ +    ++  ++ ++ +E+++KK+     I  SL G  Q
Sbjct: 54  QLYELYDSIILNDSGLERRYAFVQKLEQILKKEFPYKNIKTSLFGSTQ 101


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
            Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -3

Query: 251  IIQRYRHGAVWYFAGFVSSFCVRHFVHRALRAVRKNAREQ 132
            ++  Y+H   W   G+ +S+C +HF+H       ++ R+Q
Sbjct: 971  LLNIYQH---WQRNGYSNSWCSKHFLHSKTLKRARDIRQQ 1007


>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 313

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 315 ERKELSKLFDAVEIMPPNVQN 377
           E K+LS  F +VEI+PP+  N
Sbjct: 20  ENKKLSHRFKSVEIVPPSSSN 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,481,650
Number of Sequences: 5004
Number of extensions: 48664
Number of successful extensions: 158
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)