Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20h24
         (622 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0859 + 20367738-20368391                                         37   0.011
09_04_0384 - 17153064-17154233                                         34   0.10 
08_02_0046 - 11576005-11576106,11576529-11576631,11576985-115770...    30   1.7  
04_04_0670 - 27128153-27129075,27129152-27129266,27129348-271295...    30   1.7  
09_06_0078 + 20727684-20728036,20728871-20728895,20729218-207293...    29   3.9  
08_02_0459 + 17420156-17420976,17422291-17424199                       28   5.2  
10_06_0167 + 11401984-11402023,11402024-11402293,11402499-114026...    28   6.9  
05_06_0193 + 26279105-26279229,26279725-26279833,26280362-262804...    27   9.1  

>04_03_0859 + 20367738-20368391
          Length = 217

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 24/81 (29%), Positives = 40/81 (49%)
 Frame = +3

Query: 258 AKLKESGIFDWQDASLNDRERKELSKLFDAVEIMPPNVQNMFSTLRLVERVVKKQLKEGQ 437
           A+L++S      ++   +   K  S   +A  ++P +     ST    E+V KK+LKE +
Sbjct: 53  AQLEQSAETSTSESESEEVAAKTTSDSSEAAAVIPKHAAEGSSTASEEEQVAKKELKEAE 112

Query: 438 ISESLAGKFQWEKLSTRQRRE 500
             + L G+   E+L  R RRE
Sbjct: 113 EDDGLQGESARERLK-RHRRE 132


>09_04_0384 - 17153064-17154233
          Length = 389

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
 Frame = +3

Query: 219 PDSSMPITLDNIKAKL----KESGIFDWQDASLNDRERKELSKLFDAVEIMPPNVQNMFS 386
           P  S P+ +DN   KL    K+ G   W+D  +++      S LFD  E  P +   +  
Sbjct: 271 PPRSTPLWVDNYLDKLGSVLKKGG---WRDREVDEMVEVTASGLFDGEEAPPADADAVLD 327

Query: 387 TLRL-VERVVKKQLKEGQISESLAGKFQWEKLSTRQRRERP 506
            L L  +R      + G  SE ++  F    L  R+R+E+P
Sbjct: 328 ALFLKTDRCSDSLRRAGWTSEDVSDAF---GLDLRRRKEQP 365


>08_02_0046 -
           11576005-11576106,11576529-11576631,11576985-11577022,
           11577244-11577290,11577392-11577694,11579595-11579703
          Length = 233

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +3

Query: 303 LNDRERKELSKLFDAVEIMPPNVQNMFSTLRLVERVVKKQLKEG 434
           LND+E +  S    A++     ++++ S LRLVE  + K+ +EG
Sbjct: 32  LNDQEYEHRSAAIKAIQAA--EIESILSRLRLVESYISKEQQEG 73


>04_04_0670 -
           27128153-27129075,27129152-27129266,27129348-27129537,
           27129652-27129786,27129874-27129971,27131075-27131764
          Length = 716

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = +3

Query: 129 LLFAGVLSYGTQCPMHEMTDAKAAYKSGEIPDSSMPITLDNIKA 260
           LL   +LS+G   P+  ++D K  + S +IP+SSM  +L   KA
Sbjct: 332 LLLGAILSWGVMWPL--ISDLKGDWYSADIPESSMK-SLQGYKA 372


>09_06_0078 +
           20727684-20728036,20728871-20728895,20729218-20729347,
           20729441-20729571,20729654-20729742,20730127-20730203,
           20730279-20730412
          Length = 312

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = -2

Query: 165 IACRKKERPRTVKSI 121
           IACR+++RPRTVK I
Sbjct: 157 IACRQEDRPRTVKEI 171


>08_02_0459 + 17420156-17420976,17422291-17424199
          Length = 909

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 103 RTLIS-CYGFYCSRAFFLTARNALCT 177
           R LIS C+GF C R F+LT +  + T
Sbjct: 812 RLLISGCHGFSCLRQFYLTGQQPIFT 837


>10_06_0167 +
           11401984-11402023,11402024-11402293,11402499-11402632,
           11402737-11403663
          Length = 456

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +3

Query: 210 GEIPDSSMPITLDNIKAKLKESGIFDWQDASLNDRERKELSKLFDAVEIMPPNVQNMFS 386
           G+IPD++ P   DN+    K   ++ + DA + D    +LS  +   +I P  + ++ S
Sbjct: 229 GDIPDNNSPSEKDNVSVVTKGKDLY-YDDAEILDMVTIDLSSNYLTGDI-PQEITSLLS 285


>05_06_0193 +
           26279105-26279229,26279725-26279833,26280362-26280437,
           26280527-26281472,26281564-26281615,26281945-26282067,
           26282144-26282219,26282308-26282492,26282615-26282806,
           26282895-26282963,26283745-26283954,26285602-26285751,
           26286283-26286344,26286428-26286503,26286575-26286745
          Length = 873

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -1

Query: 481 DSFSHWNFPAKDSDICPSL--SCFLTTLSTRR 392
           DS SHW + A D  I PS+   C LT +   R
Sbjct: 745 DSLSHWIYAASDMFIVPSMFEPCGLTQMIAMR 776


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,408,635
Number of Sequences: 37544
Number of extensions: 293859
Number of successful extensions: 748
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)