Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20h22
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   0.94 
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   3.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.8  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -3

Query: 129 RQPISSLTYSDKW--YSSLQAALSLCIILVFL-SNIF 28
           R P   L Y+  +  YSSL +    CII+VFL  NIF
Sbjct: 331 RTPDQCLFYNTDFIIYSSLSSFYIPCIIMVFLYYNIF 367


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +2

Query: 158 RTFKNAVELGASRGYVSRHFLPDSVEKVTLCDTSRTHLDKAIVGEGVQYEKMIMDEENFE 337
           R  +   +LG+ R   S+   PDS +K    +TS+T +      EG+Q     + +   E
Sbjct: 67  RRIREIEKLGSER---SKSRSPDSRDKSNTSNTSKTIILSDKGPEGIQINATELQKIKLE 123

Query: 338 LPDD 349
           +  D
Sbjct: 124 IHRD 127


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -3

Query: 684 PANLRSRINSKALGYQIVILSMSTVCNVKPAALSKPP 574
           P N+ + + S ++    VI + + V   +P ++S PP
Sbjct: 730 PTNVATTVTSMSIDQSTVIQTGANVNLWQPLSVSIPP 766


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,673
Number of Sequences: 438
Number of extensions: 4350
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)