Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20h18
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    29   0.40 
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    29   0.71 
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    27   2.2  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    26   3.8  
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...    26   5.0  
SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   5.0  
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10...    26   5.0  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   6.6  
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.6  

>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 14/27 (51%), Positives = 22/27 (81%), Gaps = 1/27 (3%)
 Frame = +2

Query: 533 KYLNXNLFSLFSK-KSPLDMXLMEAMS 610
           KYLN NLF+LFSK K+ L + +M++++
Sbjct: 624 KYLNPNLFALFSKCKNDLVVYVMDSVT 650


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 16/66 (24%), Positives = 32/66 (48%)
 Frame = +1

Query: 385  KSKGEKQDGTTNKMTPLIGALSVEDLKQSNKNSETAKSSPSPERQHGDTKISKXKPVQPV 564
            K +      TT+ +T    + ++    +S  NSE+A +S + +R    T + +  PV+ V
Sbjct: 980  KPESSLSSSTTSGLTS--SSSTIPSSTRSESNSESASTSSASKRSSSSTSLVQSNPVKTV 1037

Query: 565  LKKISF 582
            +   S+
Sbjct: 1038 VSLESY 1043


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 436 IGALSVEDLKQSNKNSETAKSSPSPERQHGDTKISKXKP 552
           I  + VE L QSN N +++K +   E  HG+ ++    P
Sbjct: 319 ITMVGVEPLYQSNGNEKSSKYNVFSESAHGNHQVLSFSP 357


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 24/93 (25%), Positives = 38/93 (40%)
 Frame = +1

Query: 139 NLEKIXVRELSCRLCLCTDVVKLXPLSNEVKRKLKRLFXITVRADDNLPKAICHDCLQQV 318
           N EK   + LS  L     + K     N +  +L  +F    +A +++ KA+ H C  ++
Sbjct: 167 NFEKKGYQNLSSALDTILHIKKFSKFPNGLVTQLCNIFVNHSKAREDIQKAVNHIC--KI 224

Query: 319 STLXLYAVKVXXTQKFLEFHKQKSKGEKQDGTT 417
            +    AV        L+F K  S  E  D  T
Sbjct: 225 DSSLSVAVFQVFYSPLLDFFK-SSPSEVNDFDT 256


>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 436 IGALSVEDLKQSNKNSETAK 495
           + A+SV+DLK+ NKN +  K
Sbjct: 81  VDAMSVDDLKKLNKNKKLVK 100


>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 330

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = -1

Query: 527 SPCCRSGEGLDLAVSEFLLDCFKS----STESAPINGVILFVVPSCF 399
           +P      GL L + E L+DCF +    +TE   IN +    +PS F
Sbjct: 141 TPLANLAVGLSLNIQEVLIDCFATAACFTTEDTSINPIP--TLPSVF 185


>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 436 IGALSVEDLKQSNKNSETAK 495
           + A+SV+DLK+ NKN +  K
Sbjct: 81  VDAMSVDDLKKLNKNKKLVK 100


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = +1

Query: 379 KQKSKGEKQDGTTNKMTPLIGALSVEDLKQSNKNSETAKSSPSPERQHGDTKISKXK 549
           ++ +KGE +     K +         DLK SN + ET+ S  S   +   ++ +K +
Sbjct: 107 RKHAKGEGKRSKNRKRSSKHSEKQAVDLKSSNSSQETSSSKGSVNNKSERSREAKSR 163


>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 379 KQKSKGEKQDGTTNKMTPLIGALSVEDLKQ-SNKNSETAKSSPSPERQHGDTKI 537
           +QK K  K+D   N+ TP   +  +E      +K+ +++K  P    + G  KI
Sbjct: 49  RQKQKNTKKDTLVNRETPSKKSQKLETSDALKSKSKDSSKKEPVVVPKKGTPKI 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,146,795
Number of Sequences: 5004
Number of extensions: 38014
Number of successful extensions: 119
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)