Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20h15
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    31   0.20 
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos...    29   0.46 
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    28   1.4  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    26   4.3  
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    26   4.3  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    26   5.7  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    25   7.5  
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa...    25   9.9  

>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 318 VRFTNENIKSNVWRAKSNLKGCSISLKEFLTKPRQ 214
           +R+ N + +S+ W    NL GCS  L E+  + R+
Sbjct: 29  IRWLNYSSRSDTWEPPENLSGCSAVLAEWKRRKRR 63


>SPBC21.07c |ppk24||serine/threonine protein kinase
           Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 461

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = +2

Query: 344 LRAPSLWHSFMEEEDTFFKANLLFSTFKMTEVQSSPSTSVHPWKSKVLRRCRVSRLSI 517
           L   +++  F +E   FF  N+  ST K + V   PST   PW          S LS+
Sbjct: 29  LSIENIFGRFPKEFFQFFSINVSKSTTKKSSVVIKPSTITAPWLENEYLDSNTSLLSV 86


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +3

Query: 372 LWKKKT-HFSRPTYYLAHL-R*LKCNPLRQPRYIPGKAKS 485
           L KK T +  R +  +AH+   L+CNP+R P Y   +AK+
Sbjct: 60  LMKKATDNLFRKSISVAHVFAFLRCNPIRSPNYYIQQAKA 99


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +1

Query: 79  QQQRAQLFHSCYLMTCSISCLDNYDSILGPAGSHSEVSSCLDKY 210
           + Q AQ++    ++ CS+    N+ S L P   H+  S+C++ +
Sbjct: 626 ETQEAQVYKG--MLKCSVCNFSNWKSKLIPNCGHAFCSNCMEPF 667


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 86  KGLSSSIAVTL*RVPLVVLITMIPSWVQ 169
           K LS  +  T+  + +++ +T +PSWVQ
Sbjct: 53  KRLSIIVWTTVYLIGIIIQVTTVPSWVQ 80


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 277 SPNIGFNVFISEPHKNGPVMLLTSRTK 357
           +PN+ F  F  E H+   V  L S+TK
Sbjct: 312 APNVDFGNFAKERHRENDVSELYSKTK 338


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 432 LKCNPLRQPRYIPGKAKSCVAAESPDYQSSSCT-LRFVSGAAQ 557
           LK NP+  P  +PG   + V +   D+ +++ T  + VS A+Q
Sbjct: 518 LKLNPVHPPFSLPGDVDNKVYSYPEDFNATNTTEYKSVSRASQ 560


>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 3   HFYYIDFLPHHSFHSHEMPLKL 68
           H++  DFL   S HS  +P+ L
Sbjct: 332 HYFSFDFLQKASLHSSTLPIHL 353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,873,043
Number of Sequences: 5004
Number of extensions: 61536
Number of successful extensions: 146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)