Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20h15
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0364 - 22727978-22729149,22730475-22730727,22731628-227319...    31   0.84 
11_06_0361 - 22711200-22712180,22712523-22712729,22715205-227159...    31   0.84 
02_04_0555 - 23840634-23841035,23841388-23841501,23841742-238418...    28   5.9  
06_01_0248 - 1871955-1872199,1872289-1872447,1873139-1873237,187...    28   7.8  
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265...    28   7.8  

>11_06_0364 -
           22727978-22729149,22730475-22730727,22731628-22731963,
           22732306-22732512,22734988-22735686,22736441-22736590,
           22740204-22740962,22741023-22741235
          Length = 1262

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -2

Query: 593 WVNLKHRFSLRDLGCS 546
           WVN+ H F+LRDL CS
Sbjct: 484 WVNVSHPFNLRDLACS 499


>11_06_0361 -
           22711200-22712180,22712523-22712729,22715205-22715903,
           22717848-22717979,22720422-22721180,22721241-22721453
          Length = 996

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -2

Query: 593 WVNLKHRFSLRDLGCS 546
           WVN+ H F+LRDL CS
Sbjct: 478 WVNVSHPFNLRDLACS 493


>02_04_0555 -
           23840634-23841035,23841388-23841501,23841742-23841844,
           23842415-23842467,23842544-23842644,23842702-23842879,
           23842998-23843120,23843515-23843656,23843854-23843959,
           23844236-23844305,23844430-23844588,23845229-23845329,
           23845410-23845503
          Length = 581

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = -1

Query: 372 KECHRLGARSQEHNRPILVRFTNENIKSNVWRAKSNLKGCSISLKEFLTKPRQSIFIKAR 193
           K    +GA S    RP+  + TNE     V  A S ++G  +S+++ L        +K+ 
Sbjct: 73  KASSAMGA-STSTKRPLTSKVTNEGENDRVKYASSAMQGLRMSMQDALAVELDLDALKST 131

Query: 192 AHFGM 178
           + FG+
Sbjct: 132 SFFGV 136


>06_01_0248 -
           1871955-1872199,1872289-1872447,1873139-1873237,
           1873420-1873589,1874420-1874868
          Length = 373

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -1

Query: 600 RKMGELETQIQSAGLGLLRTQIGECMKKIDSLETRQRR 487
           +K+G + T + S G+GLLR +  E +K+  SL  +  R
Sbjct: 311 KKIGTVNTALGSRGMGLLRLE--EALKQNSSLAIKDNR 346


>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
            2657523-2657649,2657731-2657812,2658172-2658196
          Length = 2621

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/62 (22%), Positives = 33/62 (53%)
 Frame = -1

Query: 645  AEILTIQKNLEENFTRKMGELETQIQSAGLGLLRTQIGECMKKIDSLETRQRRKTLLFQG 466
            A++  +  NL+  FT +     T+++S    ++  Q  E  ++ + + + +R  +LL++ 
Sbjct: 2101 ADLFNVMSNLQNKFTSQ----NTELESLRENIIELQ-SEIKQRDEEILSMRRNLSLLYEA 2155

Query: 465  CT 460
            CT
Sbjct: 2156 CT 2157


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,383,734
Number of Sequences: 37544
Number of extensions: 390721
Number of successful extensions: 1024
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)