Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20h15
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    31   0.013
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    24   1.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.1  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   6.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.1  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   6.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.1  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 30.7 bits (66), Expect = 0.013
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 321 LVRFTNENIKSNVWRAKSNLKGCSISLKEF 232
           L+++ N ++K N W   SNL  CS  L+EF
Sbjct: 262 LIKWKNWDLKYNTWEPISNLINCSDILEEF 291


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 15  IDFLPHHSFHSH 50
           +DF+P+HS H H
Sbjct: 118 LDFVPNHSSHEH 129


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +1

Query: 121 TCS--ISCLDNYDSILGPAGSHSEVSSCLDKYRLPGLC 228
           TCS  ++ L  Y  +  P+G H+  +  L      GLC
Sbjct: 499 TCSGEVASLTEYHHVAPPSGHHASSAPLLAATLAGGLC 536



 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 475 KQSLASLPSLQTINLLHA 528
           ++ L  +P L+T+N LH+
Sbjct: 386 RELLKKIPDLRTLNTLHS 403


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 466 SLEKQSLASLPSLQTINL 519
           +L   SL SL +LQT+NL
Sbjct: 161 ALPVNSLCSLDNLQTLNL 178


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 207 FIKARAHFGMRSCWTQDGIIVIKTTNG 127
           ++K R H  +  C+  DGI ++   NG
Sbjct: 98  YLKER-HITLHHCYDADGIKLMNEENG 123


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 171 CWTQDGIIVIKTTNG 127
           CWTQD  I+  T  G
Sbjct: 212 CWTQDEDIICSTPIG 226


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 207 FIKARAHFGMRSCWTQDGIIVIKTTNG 127
           ++K R H  +  C+  DGI ++   NG
Sbjct: 98  YLKER-HITLHHCYDADGIKLMNEENG 123


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 171 CWTQDGIIVIKTTNG 127
           CWTQD  ++  T  G
Sbjct: 159 CWTQDEDVICSTPIG 173


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,075
Number of Sequences: 438
Number of extensions: 3767
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)