Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20h14
(711 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 65 1e-11
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 2.0
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 27 3.5
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar... 26 6.1
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 26 6.1
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 25 8.1
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 25 8.1
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 25 8.1
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 25 8.1
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb... 25 8.1
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 64.9 bits (151), Expect = 1e-11
Identities = 32/97 (32%), Positives = 56/97 (57%)
Frame = +3
Query: 378 IAELALQVADINKKAERSESMVREITCEIKQLDCAKCNLTAAITALNHLHMLAGGVDTLT 557
I L +++ + AE ++S + ++T EIK LD AK NL ++T L L ML + L
Sbjct: 81 IVSLLQELSTLQSVAENTQSSIVQMTSEIKNLDFAKQNLATSMTMLKRLQMLVTAYEKLR 140
Query: 558 TMTKNRQYKEIALPMQAIMEVLQHFECYRDIRELSVL 668
T+ +N+++ E MQA +++L F+ YR + ++ L
Sbjct: 141 TLRQNQKFGEAISLMQATLQLLNFFKKYRSVERIASL 177
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = +3
Query: 366 AQRCIAELALQVADINKKA----ERSESMVREITCEIKQLDCAKCNLTAAITALNHL 524
A+ CI E D+++K E SM+ EI Q+D KC + +I + L
Sbjct: 3341 AEECIQETIAACKDLDEKLLQLQEEYASMISEIHSMELQMDEVKCKMQRSIEVITDL 3397
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 26.6 bits (56), Expect = 3.5
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Frame = +3
Query: 411 NKKAERSESMVREITCEIKQLDCAKCNLTAAITALNHLHMLAGGVDTLTTMTKNRQYKEI 590
+K +E SES+ R I + C + + LNH+H+L G + + ++ E+
Sbjct: 17 SKISEISESVGRAIRYCKEDGKVEGCETASHVDFLNHIHLLLGNYNNDLASSIEKKKSEL 76
Query: 591 ALPMQAIMEVLQ-HFECYRD--IRELSVLRDQVHSI 689
+ + V+ H E +D I SV ++ S+
Sbjct: 77 IVRNSEGLPVMDIHEEVDKDGNIISASVAPQRISSV 112
>SPAC1705.03c ||SPAC23H4.19|conserved fungal
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 25.8 bits (54), Expect = 6.1
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 214 LMYATASKSSLSNCSVPPIN-SSMRLITELGKLI*TSGPLSLSSVAS 77
L++A A + SNCS P N S+ + EL +G L +S +
Sbjct: 10 LLFAAARVQAASNCSSGPYNISAQGTLDELNSCTVLNGDLYISDAGN 56
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = -2
Query: 539 ASQHVQMVEGGNSSGQITLSAVQLLYLASYLPDHAFASFSFL 414
+++++ ++E G+ + +AVQLL +LPD + S++
Sbjct: 677 SAKNILILEMGSDKQFLRRAAVQLLDSCKHLPDSVITTLSYV 718
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 25.4 bits (53), Expect = 8.1
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +2
Query: 536 WRCGHPHNNDEEPPVQGN 589
W HP + EEPP++G+
Sbjct: 675 WILNHPDESFEEPPLEGS 692
>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 528
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/63 (17%), Positives = 32/63 (50%)
Frame = +3
Query: 51 KIYVKMDSNDATDDKDSGPEVQINFPSSVMSRIEELMGGTEQFDSDDFDAVAYINRVFPT 230
K+Y + +++ + +KD ++ + +S + + ++ + + D A+AY ++ T
Sbjct: 62 KLYSDVTTSNTSHEKDGSEDISVLNVNSKGASLNQVSTQKRRSEKDLLAAIAYCQKLSGT 121
Query: 231 EQS 239
Q+
Sbjct: 122 NQA 124
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 25.4 bits (53), Expect = 8.1
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = +3
Query: 117 INFPSSVMSRIEELMGGTEQFDSDDFDAVAYINRVFPTEQ---SLSGVESAVARCEFRLS 287
I+ PS +SR+ G T + FD I V E S+ G ++ V +S
Sbjct: 887 IDIPSKAVSRVVGRNGSTVENIRTQFDVKIDIGDVSTEETTPVSVRGAKADVENAIKEIS 946
Query: 288 GVEQDIRRLV 317
+ ++++ LV
Sbjct: 947 AIAEEVKNLV 956
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 25.4 bits (53), Expect = 8.1
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +3
Query: 45 FIKIYVKMDSNDATDDKDSGPEVQINFPSSVMSRIEELMGGTEQFDSDDFDAVAYINRVF 224
FIK Y+ S DAT+D EV + E L+ E+FD+ +A +
Sbjct: 280 FIKPYIS--SLDATEDDVDFTEVDDIPEDDELEEEEPLLPSKEEFDASFLQPLADVGPTL 337
Query: 225 P 227
P
Sbjct: 338 P 338
>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 730
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -1
Query: 183 YRTVPFLPLIPLCGSLRNSES*FELLARCLYHP 85
Y P LPL PL + + SES +E AR L P
Sbjct: 422 YDVNPPLPLNPLPSNTQQSESTYEYSARQLPKP 454
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,624,180
Number of Sequences: 5004
Number of extensions: 48821
Number of successful extensions: 148
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -