Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20h14
(711 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1723 - 39443176-39443505,39443615-39443710,39443834-394439... 130 8e-31
12_01_0921 - 9102983-9103360,9104505-9104606,9104709-9104801,910... 30 1.6
08_02_0045 - 11560147-11560434,11560949-11560960,11561079-115611... 29 4.8
01_07_0302 - 42611150-42611812,42611881-42611961,42612064-426121... 29 4.8
02_04_0309 - 21924042-21925580 28 6.4
02_01_0130 - 938530-939990 28 6.4
03_01_0286 - 2208242-2208249,2208399-2208506,2209482-2210226 28 8.4
01_02_0103 + 11153389-11153856 28 8.4
>01_06_1723 -
39443176-39443505,39443615-39443710,39443834-39443902,
39444381-39444443,39444521-39444598,39444725-39444838,
39445727-39445804,39446457-39446522,39446739-39446804,
39446896-39447003,39447355-39447432,39447951-39448010,
39448087-39448191,39448407-39448595,39448922-39448985,
39449244-39449385,39449494-39449654,39449952-39450076,
39450230-39450300,39450410-39450560,39450713-39450769,
39451049-39451143,39451331-39451379
Length = 804
Score = 130 bits (315), Expect = 8e-31
Identities = 67/169 (39%), Positives = 100/169 (59%)
Frame = +3
Query: 186 DDFDAVAYINRVFPTEQSLSGVESAVARCEFRLSGVEQDIRRLVXXXXXXXXXXXXXLTE 365
D A+ YIN++FPTE SLSGVE + + + + V+ I V L
Sbjct: 2 DKSSALEYINQMFPTEASLSGVEPLMQKIQSEIRRVDASILAAVRQQSNSGTKAKEELAA 61
Query: 366 AQRCIAELALQVADINKKAERSESMVREITCEIKQLDCAKCNLTAAITALNHLHMLAGGV 545
A + EL ++ +I KAE+SESMV+EI +IK+LDCAK ++T ITAL+ L ML V
Sbjct: 62 ATNAVQELMHKIHEIKTKAEQSESMVQEICRDIKKLDCAKRHITTTITALHRLTMLVSAV 121
Query: 546 DTLTTMTKNRQYKEIALPMQAIMEVLQHFECYRDIRELSVLRDQVHSIR 692
+ L M RQYKE A ++A+ ++ HFE YRD+ +++ LR++ +I+
Sbjct: 122 EQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDVPKITELREKFKNIK 170
>12_01_0921 -
9102983-9103360,9104505-9104606,9104709-9104801,
9104875-9105087,9105172-9105412,9105501-9105859,
9106006-9106218
Length = 532
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +2
Query: 449 DNLRDKAVGLR*V*SDRCYYRPQPSAHAGWRCGHPHNNDEEPPVQGNS 592
+N D+ VG + D RP PS W GH N++E+P Q NS
Sbjct: 140 ENNGDEDVGSGHLLQDNDVNRP-PSPVMDWSYGHDANHEEQPAQQTNS 186
>08_02_0045 -
11560147-11560434,11560949-11560960,11561079-11561102,
11561562-11561801
Length = 187
Score = 28.7 bits (61), Expect = 4.8
Identities = 21/62 (33%), Positives = 32/62 (51%)
Frame = +3
Query: 381 AELALQVADINKKAERSESMVREITCEIKQLDCAKCNLTAAITALNHLHMLAGGVDTLTT 560
A L + AD +++ ERSE R+I + + L AA+ L +HML GG+ L
Sbjct: 94 ARLEHKTADGDER-ERSEEGRRQIAVRLAAVVSGSLMLAAAV--LLEMHMLMGGLRELDA 150
Query: 561 MT 566
M+
Sbjct: 151 MS 152
>01_07_0302 -
42611150-42611812,42611881-42611961,42612064-42612150,
42612283-42612378,42612479-42612543,42612919-42612975,
42613066-42613147,42613235-42613327,42613714-42613785,
42613881-42613985
Length = 466
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 232 SVGNTLLMYATASKSSLSNCSVPPINSSMRLITELGKL 119
++G+ L+ K SLS+C + I SS+ EL +L
Sbjct: 145 TIGDALMKAKAMKKLSLSHCQIEKIGSSLTACVELKEL 182
>02_04_0309 - 21924042-21925580
Length = 512
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 129 SSVMSRIEELMGGTEQFDSDDFDAVAYINRVFPTEQSLSGVES 257
+ V + + + +GG E FD D ++ Y+ VF L V S
Sbjct: 330 AKVRAEVTDALGGRESFDEGDAASLTYLQCVFKEAMRLHPVGS 372
>02_01_0130 - 938530-939990
Length = 486
Score = 28.3 bits (60), Expect = 6.4
Identities = 32/124 (25%), Positives = 49/124 (39%), Gaps = 11/124 (8%)
Frame = +3
Query: 357 LTEAQRCIAELALQVADINKKAERSESMVREITCEIKQLDCAKCNLTAAITALNHLHMLA 536
+ EA R L A +++ ER E VR+ C C K AA+ +L
Sbjct: 299 MLEAVRTPEGYGLAAALLDELGERPELHVRQQDCTAVMKVCVKLRRYAAVESLFGWFRDT 358
Query: 537 GGVDTLTTMT----------KNRQYKEIALPMQAIMEVLQHFECYRDIRELSV-LRDQVH 683
GG T+ T ++R+ +A M+ L YR + +L V LRD
Sbjct: 359 GGRPTVVMYTAVIHSRCRDGRHREALSLAWEMERHAGGLLDLPAYRVLVKLCVALRDHER 418
Query: 684 SIRH 695
+R+
Sbjct: 419 GVRY 422
>03_01_0286 - 2208242-2208249,2208399-2208506,2209482-2210226
Length = 286
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -2
Query: 560 CCEGVHTASQHVQMVEGGNSSGQITLSAVQLLYLASYLP 444
C + V A QHV++ GG SGQ+ L + Y SY P
Sbjct: 202 CGQCVTQAVQHVEVECGGAPSGQVYLEKCYISY--SYYP 238
>01_02_0103 + 11153389-11153856
Length = 155
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 521 SAHAGWRCGHPHNNDEEPPVQGNSVA 598
+A AGW CG PH++ P V+ ++ A
Sbjct: 27 AAPAGW-CGSPHSSSSSPSVEVDATA 51
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,930,176
Number of Sequences: 37544
Number of extensions: 359036
Number of successful extensions: 982
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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