Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20h14
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z27079-8|CAA81595.2|  798|Caenorhabditis elegans Hypothetical pr...   118   4e-27
Z66567-1|CAA91491.1|  887|Caenorhabditis elegans Hypothetical pr...    33   0.20 
AL032652-2|CAB63397.2|  322|Caenorhabditis elegans Hypothetical ...    28   5.7  
Z71261-2|CAA95805.1|  813|Caenorhabditis elegans Hypothetical pr...    28   7.6  
AL117203-3|CAB55101.1|  448|Caenorhabditis elegans Hypothetical ...    28   7.6  

>Z27079-8|CAA81595.2|  798|Caenorhabditis elegans Hypothetical
           protein T05G5.8 protein.
          Length = 798

 Score =  118 bits (284), Expect = 4e-27
 Identities = 63/196 (32%), Positives = 109/196 (55%)
 Frame = +3

Query: 114 QINFPSSVMSRIEELMGGTEQFDSDDFDAVAYINRVFPTEQSLSGVESAVARCEFRLSGV 293
           ++    +VM+ I ++     ++   +   +A IN +FPTEQSL+ ++S +A  E  +  +
Sbjct: 8   ELKLSDNVMNEISDMC--ITEYCKPNMSLMAQINELFPTEQSLTQLDSIIASVEGEIGEL 65

Query: 294 EQDIRRLVXXXXXXXXXXXXXLTEAQRCIAELALQVADINKKAERSESMVREITCEIKQL 473
           + ++  LV             L  AQ  + EL   +  I ++ + S+ +VRE+T +IKQL
Sbjct: 66  DNELAYLVETNANVSERGEEALKHAQDAMIELEKSIGSIRERTKSSDEIVREMTRDIKQL 125

Query: 474 DCAKCNLTAAITALNHLHMLAGGVDTLTTMTKNRQYKEIALPMQAIMEVLQHFECYRDIR 653
           D AK NLTA+IT L+HLH+L  GV++L      + Y  IA  + AI+ VLQ F+ Y++  
Sbjct: 126 DIAKRNLTASITTLHHLHILLTGVESLGAWVDKKDYSSIARQLPAILNVLQLFDAYKESD 185

Query: 654 ELSVLRDQVHSIRHDL 701
           +++ L  Q+  ++  L
Sbjct: 186 QIANLSGQLDKLKASL 201


>Z66567-1|CAA91491.1|  887|Caenorhabditis elegans Hypothetical
           protein ZK455.1 protein.
          Length = 887

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 19/69 (27%), Positives = 34/69 (49%)
 Frame = +3

Query: 492 LTAAITALNHLHMLAGGVDTLTTMTKNRQYKEIALPMQAIMEVLQHFECYRDIRELSVLR 671
           L AA+   +  H+L   V+T+    KN Q  +  +P +    +LQ F     + +L+ +R
Sbjct: 41  LEAAVRHCDEFHVLKKDVETILDW-KNSQRNQAEIPFKPARVILQDFTGVPAVVDLAAMR 99

Query: 672 DQVHSIRHD 698
           D V ++  D
Sbjct: 100 DAVQNMGAD 108


>AL032652-2|CAB63397.2|  322|Caenorhabditis elegans Hypothetical
           protein Y63D3A.3 protein.
          Length = 322

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = +3

Query: 72  SNDATDDKDSGPEVQINFPSSVMSRIEELMGGTEQFDSDDFDAVA-YINRVFPTEQSLSG 248
           SN +  +     + QINFP S+   +E L+   ++   DD + +   + +  P  Q+L G
Sbjct: 75  SNGSLRESRGKIDRQINFPGSLKQFVEHLLHIFKEHKIDDLEIMCNSVYQYKPDIQALKG 134

Query: 249 VESAVARCEFRLS 287
           ++    +  ++ S
Sbjct: 135 IKMRTLKLRYQES 147


>Z71261-2|CAA95805.1|  813|Caenorhabditis elegans Hypothetical
           protein F21C3.2 protein.
          Length = 813

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 467 AVGLR*V*SDRCY-YRPQPSAHAGWRCGHPH 556
           A GL  + +D  Y Y P+PS +AG  CG P+
Sbjct: 479 ADGLSNMYTDNLYSYAPRPSCNAGPTCGSPY 509


>AL117203-3|CAB55101.1|  448|Caenorhabditis elegans Hypothetical
           protein Y48C3A.4 protein.
          Length = 448

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
 Frame = -3

Query: 307 LISCSTPESLNSQRATA--LSTPERDCSVGNTLL--MYATASKSSLSNCSVPPIN-SSMR 143
           L S + P SL +   T   +S+    CS    +   +       SLS CS PPIN S   
Sbjct: 101 LFSPTVPTSLPTPTLTPTIISSVSPQCSTSPGVFNTLNTLLQMESLSKCSTPPINISHSP 160

Query: 142 LITELGKLI*TSGPLSLSSVASFESIL 62
             T L K+   S   S+S  A F S+L
Sbjct: 161 TTTPLEKMRKLS---SVSMPAEFVSVL 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,766,770
Number of Sequences: 27780
Number of extensions: 285818
Number of successful extensions: 1041
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)