Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20h13
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.4  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   8.5  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   8.5  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -3

Query: 326 QLHRLCSHSSSALVEFDCLFRLHF-VANTTVR 234
           +LHR   HS S+L +   +  LH  + N  +R
Sbjct: 130 ELHRAACHSGSSLTKSRLMRCLHHDIENAHIR 161


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 465 PPVNRLLRHQPQVATRPSSADRL 533
           PP   LLR+   +AT P    +L
Sbjct: 827 PPTPNLLRYFASIATNPKEQAQL 849


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 571 LAFIPIFTNPRFFKRSAELGLVA 503
           L  +P+  +P F + S E+GL +
Sbjct: 341 LGHMPLLADPSFAQFSQEIGLAS 363


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 475 TGSSATSHKSLQDR 516
           T +S T+HKSLQ R
Sbjct: 47  TKNSLTTHKSLQHR 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,104
Number of Sequences: 438
Number of extensions: 3391
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)