Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20h10
(264 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 26 0.99
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 24 3.0
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar... 24 4.0
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 23 5.3
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 23 5.3
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 23 5.3
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 23 7.0
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 23 7.0
SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 23 7.0
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce... 23 9.2
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 23 9.2
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 25.8 bits (54), Expect = 0.99
Identities = 13/45 (28%), Positives = 28/45 (62%)
Frame = +1
Query: 118 DNIEINEADEEALKLFKSSKTERVRTLADIIKEKITDKHTELQTQ 252
DNIE++++DEE K +++ + + ++++ D+ TEL +Q
Sbjct: 550 DNIELSDSDEEEEKATARKESDEKGSSS---QKELVDRMTELASQ 591
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 24.2 bits (50), Expect = 3.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 139 ADEEALKLFKSSKTERVRTLADIIKEKITDKHTEL 243
A+ + LKL + E +RT+ + K + DK T++
Sbjct: 199 ANSDGLKLAREVDPEGLRTIGVLTKVDLMDKGTDV 233
>SPBC336.08 |spc24||spindle pole body protein
Spc24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 198
Score = 23.8 bits (49), Expect = 4.0
Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Frame = +2
Query: 8 RLVRLQQN--MSLLCQALKIKDQIVQIQRR 91
+L+ + +N MSL Q K+K+Q++Q++ R
Sbjct: 92 KLLNITENEIMSLESQLQKMKEQLLQLEER 121
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 23.4 bits (48), Expect = 5.3
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 169 SSKTERVRTLADIIKEKITDKHTELQTQFSD 261
+ KT ++ LA ++ +K+T + QT+ SD
Sbjct: 478 TGKTTTIQLLAGLLGQKVTVINMSQQTESSD 508
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 23.4 bits (48), Expect = 5.3
Identities = 11/43 (25%), Positives = 20/43 (46%)
Frame = +1
Query: 133 NEADEEALKLFKSSKTERVRTLADIIKEKITDKHTELQTQFSD 261
N+ +EE + ER ++ + +TDK + L T F +
Sbjct: 140 NDEEEEDDQTMDEDAFERKSMQGELKERNLTDKTSTLSTSFGE 182
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 23.4 bits (48), Expect = 5.3
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 2 TMRLVRLQQNMSLLCQALKIKDQIVQIQRRMTWNLTHTMITLKS 133
T L R +++MS+L L K + RR+T+N THT + S
Sbjct: 411 TPTLHRNERSMSVLPFQLA-KSFTSALPRRLTFNRTHTKASTMS 453
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 23.0 bits (47), Expect = 7.0
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = +1
Query: 115 YDNIEINEADEEALKLFKSSKTERVRTLADIIKE----KITDKHTELQTQFS 258
Y N+ + D L K +K ++ D++KE K KH +++ Q +
Sbjct: 288 YPNVSKDARDAACLYALKIAKDSKIIKNLDLVKEHAFVKTLFKHPDIKIQLA 339
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 23.0 bits (47), Expect = 7.0
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -3
Query: 148 LHLLR*FQCYHSMCQVPS 95
+H L F Y+S+CQ P+
Sbjct: 326 IHELNLFNTYNSVCQTPT 343
>SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 23.0 bits (47), Expect = 7.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 109 TYYDNIEINEADEEALKLFKSSKTERVRTLADI 207
T DN + E DE+ ++L E++ LAD+
Sbjct: 140 TLDDNRALQEFDEQVVQLTNRMYKEQLAILADL 172
>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 22.6 bits (46), Expect = 9.2
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +2
Query: 8 RLVRLQQNMSLLCQALKIKDQIVQIQRRMTW 100
RL NM LLC L ++ +++ TW
Sbjct: 270 RLTHFFTNMPLLCGPLIFVPKLWDVRKPATW 300
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 22.6 bits (46), Expect = 9.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 83 QRRMTWNLTHTMITLKSTKQMKKHSNCSNH 172
QRR + ++TH+ L ST + + N NH
Sbjct: 40 QRRSSGSITHSPTALSSTTSL--NENDGNH 67
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.308 0.128 0.340
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 640,574
Number of Sequences: 5004
Number of extensions: 6843
Number of successful extensions: 21
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 53488084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
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