Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20h10
         (264 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    23   0.84 
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    20   4.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    19   7.8  

>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 22.6 bits (46), Expect = 0.84
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +1

Query: 151 ALKLFKSSKTERVRTLADIIKEKITDKHTELQTQF 255
           A KLF      +V      +K  + DKH E Q ++
Sbjct: 2   AKKLFTCQLCGKVLCSKASLKRHVADKHAERQEEY 36


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 20.2 bits (40), Expect = 4.5
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +2

Query: 77  QIQRRMTWNLTH 112
           +IQR + WN  H
Sbjct: 112 EIQRALEWNAAH 123


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 19.4 bits (38), Expect = 7.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 133 NEADEEALKLFKSSKTERVRTLADII 210
           +E+D   L+  KSSK+   R L +I+
Sbjct: 435 DESDVVELQPVKSSKSSGWRKLRNIV 460


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.308    0.128    0.340 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,077
Number of Sequences: 438
Number of extensions: 488
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4887441
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.4 bits)