Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20g24
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    29   0.60 
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.4  
SPCC11E10.07c |||translation initiation factor eIF2B alpha subun...    27   2.4  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    26   5.6  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    25   7.4  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    25   7.4  
SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...    25   9.7  
SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual     25   9.7  
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...    25   9.7  

>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 563 WANAALWPEPSVWAVYPLWSVLLTRW 640
           W +   +P PS W   P ++++L +W
Sbjct: 50  WNSHEYFPSPSNWRALPFYTIILDKW 75


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = -2

Query: 624 TLHRGYTAHTEGSGHRAALAHKTGTNQMKDMGRRGRTVRIETDRVHKAHS 475
           T+    T+HTE S  +A    +T T +++ +              HK+HS
Sbjct: 739 TIVEATTSHTESSNSKAPAIEETTTTKVEVVAAHDAVSISSNSSTHKSHS 788


>SPCC11E10.07c |||translation initiation factor eIF2B alpha
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -2

Query: 459 TGMVHSTGNISACKARMVQNTVRTVHMGR-YKDRKAHMGHSWAR 331
           T  +H  G+   CK  +V+N    +   R  + R AH+G+   R
Sbjct: 91  TRSLHDVGDFEQCKRHLVENGKLFIQRARACRQRIAHLGYPLIR 134


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/45 (28%), Positives = 16/45 (35%)
 Frame = +2

Query: 473 ILWALWTLSVSMRTVRPLRPMSFIWFVPVLWANAALWPEPSVWAV 607
           +L   WT    M T  P  P+       V W+     P  S W V
Sbjct: 119 VLHQKWTCVAQMSTHLPSDPLELCRIHSVAWSPLVSLPSSSPWGV 163


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
 Frame = -2

Query: 639 HLVSKTLHRGYTAHTEGSGHRAALAHKTGTNQMKDMG----RRGRTVRIETDRVHKAHSM 472
           H+ S + HR  + +      +++L  +    + K +     R GR+ +   D++ +    
Sbjct: 110 HVASSSRHRSPSHNDSSPSTQSSLKSRGSIRRYKSVREGSHRPGRSSKEPLDQIDRLDVT 169

Query: 471 ACKTTGMVHSTGNISACKARMVQNT 397
               +G  H  G   AC+    +N+
Sbjct: 170 GLYGSGSFHHDGPFDACRPHRNRNS 194


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
 Frame = +1

Query: 391 ADRVLDHARLACRNVPRAVDHARRFASHTVGLVDPVRLDADRAAPAAHVLHLVRASLVGQ 570
           A +V+D A      +PR V  +       VG+ DP R ++  A    H   +    L G 
Sbjct: 564 ATKVIDKAD-NWETLPRDVAESSLEFVSLVGIYDPPRTESKGAVELCHRAGIRVHMLTGD 622

Query: 571 CRPVARAL--RMGSVPP 615
               A+A+   +G +PP
Sbjct: 623 HPETAKAIAREVGIIPP 639


>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 562 VGQCRPVARALRMGSVPPVERLANEVEYG 648
           VGQCRP+++ +R   +  V+      ++G
Sbjct: 122 VGQCRPLSKTVRFNVLRVVKHTEGPKQFG 150


>SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 573 ALAHKTGTNQMKDMGRRGRTVRIETDRVHKA 481
           A+  K G+N + D+G+  R V I  +  HK+
Sbjct: 22  AILVKDGSNTIDDIGKTDRLVSIYPNEKHKS 52


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 562 VGQCRPVARALRMGSVPPVERLANEVEYG 648
           VGQCRP+++ +R   +  V+      ++G
Sbjct: 122 VGQCRPLSKTVRFNVLRVVKHTEGPKQFG 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,020,134
Number of Sequences: 5004
Number of extensions: 31118
Number of successful extensions: 89
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)