Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20g08
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    34   0.018
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo...    31   0.094
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    31   0.16 
SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subuni...    30   0.29 
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    28   0.87 
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    28   0.87 
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...    26   3.5  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    26   3.5  
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    26   3.5  
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe...    26   3.5  
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    26   4.7  
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    26   4.7  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    26   4.7  
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    26   4.7  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    25   8.1  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    25   8.1  

>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 33.9 bits (74), Expect = 0.018
 Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
 Frame = +1

Query: 340 EPIQPELDRSTTE--SMPQHTESFVIEQMVTVNSEEEMELKNEQTALESD-NKENSLDCE 510
           EP        TT   S+ Q     +   M  V  E E+E KN  T  E+D N+++  +C+
Sbjct: 303 EPFDTNFPALTTRPLSICQRATDIIERSMNYVFGESELEEKNASTKTENDSNEDDKEECQ 362

Query: 511 -PVPKSAPNSRPQTPK 555
                S P S   TPK
Sbjct: 363 SSSTSSVPESTASTPK 378


>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
           Tip1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 31.5 bits (68), Expect = 0.094
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
 Frame = +1

Query: 277 EHVTHKIESISDMKVQNECYIEPIQPELDRSTTESMP--QHTESFVIEQMVTVNSEEEME 450
           E +  K+E +  +  + + YI  ++  LDR+ T  +P  +   ++  E+   V+   E+E
Sbjct: 334 EVLREKVEKLQALSDEKDFYISKLEKSLDRNDTTPVPSDEKLSNYAAEKENLVSRISELE 393

Query: 451 LKNEQTAL--ESDNKENS 498
              EQ  +  E DN+  S
Sbjct: 394 HTIEQLTINNERDNERMS 411


>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 30.7 bits (66), Expect = 0.16
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +1

Query: 292 KIESISDMKVQNECYIEPIQPELDRSTTESMPQH-TESFVIEQMVTVNSEEEMELKNEQT 468
           K++++S   +    Y+    PE     TE M Q  T++  + Q  +++SE+E   KN   
Sbjct: 238 KLDTLSKSIINIFDYLLSHLPESWSIITEHMAQELTKATYVSQSSSISSEDEEIAKNADV 297

Query: 469 ALESDNKENSLD 504
             E DN     D
Sbjct: 298 PAEVDNNSTKAD 309


>SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subunit
           Mmm1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +1

Query: 499 LDCEPVPKSAPNSRPQTPKTLQGSRPQTP 585
           L C P+PKS  NS  QT        P TP
Sbjct: 32  LFCSPIPKSVANSPKQTGNETPDETPSTP 60


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
 Frame = +1

Query: 274  TEHVTHKIESISDMKVQNECYIEPIQPELDRSTTESMPQHTESFVIEQM----VTVNSEE 441
            T  VT   +    +++    +++    E   S+TE+    T S   E      VTVNS E
Sbjct: 987  TSAVTELPDPNHQLEMSTTTHVQHPNSETIPSSTENQYFDTTSGAFEANSNTEVTVNSNE 1046

Query: 442  EMELKNEQTALESDNKENSLDCEPV 516
              +  +  TA ESDN ++ L  + V
Sbjct: 1047 VSQPFDFDTANESDNDDDELPVQQV 1071


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +1

Query: 268 VITEHVTHKIESISDMKV---QNECYIEPIQPELDRSTTESMPQHT 396
           V TE+  + +++ SD K    Q     +P QP+ ++STT     HT
Sbjct: 127 VKTENFANDLDTTSDSKPVVHQTRATRKPAQPKAEKSTTSKSKSHT 172


>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 268 LFQSSKAPATEEHDLVIVFGST 203
           + + SK P  + HD+V+V GST
Sbjct: 322 VLKDSKVPKADVHDIVLVGGST 343


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1136

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +1

Query: 367  STTESMPQHTESFVIEQMVTVNSEEEMELKNEQTALESDNKENSLDCEPVPKSAP 531
            STTE + +   +F+IE  + V +  E+  K +   L +D    S+D EP P   P
Sbjct: 1049 STTELIGKKERTFIIEHYLIVLNTLELLPKEDTWILVTD---MSVDKEPDPNFLP 1100


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 451 LKNEQTALESDNKENSLDCEPVPKSAPNSRPQTPKTLQGSRPQTP 585
           LKN+ T   S + + + D  P+   AP+    TP ++  + P TP
Sbjct: 210 LKNQATRKPSSSPQTTQDSSPILTMAPS----TPVSVGSTPPSTP 250


>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 408

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 332 VTLNRYSQN*TGQLRNRCHSILSHLLLNKWLR*ILKK 442
           ++LN  S +    L    H IL HL LNK    ++K+
Sbjct: 1   MSLNNLSNSYNQYLAQESHQILRHLFLNKQYSPLVKR 37


>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 427 VNSEEEMELKNEQTALESDNKENSLDCEPVPKSAPNSRPQTPKTLQGSRP 576
           +NS + + LK       SD   ++L  + + KS+  SR    KTL GS+P
Sbjct: 405 LNSIKHLPLKRATIEPLSDQALSTLRSD-IEKSSKFSRTNALKTLYGSKP 453


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 397 ESFVIEQMVTVNSEEEMELKNEQTALESDNKENSLDCEPV-PKSAPNSRP 543
           E F  +Q   +NS  E ++  +Q   +S  K NS+  + V P+  P+  P
Sbjct: 167 EVFDRKQSAEINSPIEKDVNPQQNISDSSIKNNSIHSDEVNPEVRPDLTP 216


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/56 (25%), Positives = 24/56 (42%)
 Frame = +1

Query: 364 RSTTESMPQHTESFVIEQMVTVNSEEEMELKNEQTALESDNKENSLDCEPVPKSAP 531
           R +  S    +  F      T+ +E + E ++ QT      K NSL+C+   +  P
Sbjct: 159 RESCLSTETSSSKFSAVTAATITNETQSEKRSSQTDPSLPFKTNSLNCDVTYEEGP 214


>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 430 NSEEEMELKNEQTALESDNKENSLDCEPVPKSAPNSRPQT 549
           +SEEE EL   + ALE  N + ++       + P SR  T
Sbjct: 33  DSEEESELDTNKQALEHINAQKNITHNENKSAEPLSRQST 72


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = +1

Query: 364 RSTTESMPQHTESFVIEQMVTVNSEEEMELKNEQTALESDNKENSLDCEPVPKSAPNSRP 543
           +S+ ES+    ES    Q+    S+ ++ELK +    +    E  L C  + K   +S  
Sbjct: 656 KSSIESLISQLESIRNSQIDIAFSKNQLELKLQLYETKLKEYEQHLSCVNISKKQVSSSS 715

Query: 544 QT 549
            T
Sbjct: 716 DT 717


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +1

Query: 352 PELDRSTTESMPQHTESFVIEQMVTVNSEEEMELKNEQTALESDNKENSL 501
           PE  R+T+    Q  E    E+M     EEE E+ N ++  E ++K   L
Sbjct: 340 PETQRTTSRIETQE-EEIKEEEMEGEEEEEEEEVPNYESENELEDKVGDL 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.132    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,347,147
Number of Sequences: 5004
Number of extensions: 47537
Number of successful extensions: 187
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)