Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20g08
         (586 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    27   0.14 
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             27   0.14 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   0.72 
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   1.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.1  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    21   6.7  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 87  NGQHQQSL*NKIKRSTDPASSDSGVSCTRRPECYESKSIVDPKTITK 227
           N Q Q+S  + I R+++   S+S   C RRP  + S +   P+ I+K
Sbjct: 23  NSQSQRSSGSSISRNSN--RSESSGYCGRRPSTFGSSNEALPQPISK 67


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 87  NGQHQQSL*NKIKRSTDPASSDSGVSCTRRPECYESKSIVDPKTITK 227
           N Q Q+S  + I R+++   S+S   C RRP  + S +   P+ I+K
Sbjct: 23  NSQSQRSSGSSISRNSN--RSESSGYCGRRPSTFGSSNEALPQPISK 67


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +1

Query: 415 QMVTVNSEEEMELKNEQTALESDNKENSLDCEPVPK--SAPNSRPQTPKT 558
           QM  + +   M +KNE + +E  +   SL C P     ++P    +TP T
Sbjct: 6   QMKQITNSTTMSVKNEISTVEPVDPVKSLVCSPDLSVFTSPACGSETPLT 55


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 71  KYIKSKWTTPT 103
           KY+  +WTTPT
Sbjct: 438 KYLPERWTTPT 448


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = +1

Query: 475  ESDNKENSLDCEPVPKSAPNSRPQTPKTLQGSRPQTP 585
            +SD+K           +A N RP T       +PQ P
Sbjct: 1095 QSDDKTKETSTVTAAAAATNIRPGTADNKPQLKPQKP 1131


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 520 KSAPNSRPQTPKTLQ 564
           K  PN +P+TP T Q
Sbjct: 5   KHKPNRKPRTPFTTQ 19


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.132    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,898
Number of Sequences: 438
Number of extensions: 3180
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)