Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20f24
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    31   0.11 
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...    30   0.25 
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    29   0.57 
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ...    29   0.57 
SPAC1556.03 |azr1||serine/threonine protein phosphatase Azr1|Sch...    29   0.75 
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.3  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    27   3.0  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    27   3.0  
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    26   4.0  

>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
 Frame = +2

Query: 323 EADINKAMSKFPIKVTVYKSLPCGCLPTKIVMGEATID-MTKEFVQARKKFLEDPSN--V 493
           E D  K M+K  +  T + SL  GCL   + + +A +D M K  +Q  +   +D  N   
Sbjct: 58  EEDYAKRMAK--LSRTTFSSLETGCLKESVQVMKAEVDNMAKSHLQISQLLQDDVENAFT 115

Query: 494 SYEA-LKDAFRIVGSDGVE 547
            Y A LKD  +++ S G+E
Sbjct: 116 RYAASLKDKKKMIVS-GIE 133


>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +2

Query: 392 GCLPTKIVMGEATIDMTKEFVQARKKFLEDPSNVSYEALKDAFRIVGSD 538
           GCL     +  AT+D+ K        FL+   N + EA+++AF ++ +D
Sbjct: 289 GCLVNGAGLAMATMDIIKLHGGEPANFLDVGGNANAEAIREAFSLITND 337


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 484 GVFQKLFPCLYKFFCHVYCCFSHYYLC 404
           G+ + ++ CL   +C V CC   Y +C
Sbjct: 149 GMKENIYTCLKDLYCSVSCCDCRYGIC 175


>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 425

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -1

Query: 174 LSEKQGLFANTILSTNTSRRKSPSSCLAIFNYGNGKN 64
           L ++    ++T L+ ++S +  PSS +  F++GNGK+
Sbjct: 321 LRKRANQVSSTSLTKSSSPKPLPSSAIVKFDFGNGKS 357


>SPAC1556.03 |azr1||serine/threonine protein phosphatase
           Azr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 288

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 132 TNTSRRKSPSSCLAIFNYGNGKNRILYL 49
           +NT    S ++CL +FN GNGK   L L
Sbjct: 120 SNTVEAGSSTACLTLFNCGNGKLHSLNL 147


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -3

Query: 367 YFYRKLGHSFIYISLF*GEKT*FAAIECFNKRSTTFNNASSWI 239
           YF+R LGH ++Y+  F    T    +    K    FN  + WI
Sbjct: 208 YFHRILGHLWLYVGFF-ESCTGIVLLAGIFKGQHIFNGLAHWI 249


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
 Frame = -1

Query: 270 PPLLTTQAPGSSSHISRGSTDGHSIFTHVLKSLSEKQGLF--ANTILSTNTSRRKSPSSC 97
           PP  T      S + S    DGH  F  + +  S++   +  AN + ST      S  + 
Sbjct: 27  PPRFTLIVSFYSMNTSENDPDGHYDFPEMTEHHSDRASSYANANNVNSTQPQLVSSEQAL 86

Query: 96  LAIFNYG 76
           LAI   G
Sbjct: 87  LAILGGG 93


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/54 (25%), Positives = 22/54 (40%)
 Frame = -3

Query: 217 LDRWTLNIHTCSKIFVRKTRAFCEYNFINQHFKKKKSIILFSHFQLWEWEKQNF 56
           L +W +      KI V +   F   NF+     K+K   +  H  +W W+   F
Sbjct: 414 LYQWMIKAMNLRKIHVWE---FSRMNFVRTLLSKRKLTEIVDHGLVWGWDDPRF 464


>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 75  NGKNRILYLYYFVICGFY 22
           NG N ++Y +  ++CG Y
Sbjct: 470 NGSNPVMYFFLLMLCGLY 487


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,846,779
Number of Sequences: 5004
Number of extensions: 63375
Number of successful extensions: 192
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)