Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20f22
         (577 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0991 - 8358309-8358338,8359115-8359393,8359964-8360092,836...    28   4.6  
07_01_0990 - 8354014-8354397,8354569-8354697,8354830-8355144,835...    28   6.1  
03_06_0594 + 34950892-34951167,34952241-34952366,34952707-349530...    27   8.1  
02_04_0490 - 23411742-23412944,23413071-23413595,23413666-234137...    27   8.1  

>07_01_0991 -
           8358309-8358338,8359115-8359393,8359964-8360092,
           8360317-8360598,8361400-8361525,8363490-8363870
          Length = 408

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 445 CEASLDFLEKPKKPHPAALLQSSTFMH 365
           C A++DFLE+  +P+PA +     + H
Sbjct: 317 CAAAVDFLEEELRPYPATVNDDGMYGH 343


>07_01_0990 -
           8354014-8354397,8354569-8354697,8354830-8355144,
           8355448-8355573,8356793-8357206
          Length = 455

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 445 CEASLDFLEKPKKPHPAALLQSSTFMH 365
           C A++DF+E+ + P+PA +     + H
Sbjct: 339 CTATVDFMEEERIPYPATVNDEGMYRH 365


>03_06_0594 +
           34950892-34951167,34952241-34952366,34952707-34953018,
           34954005-34954133,34954259-34954660
          Length = 414

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 445 CEASLDFLEKPKKPHPAALLQSSTFMH 365
           C A++DF+E   +P+PA +     + H
Sbjct: 292 CTAAVDFMEDKLRPYPATVNDEGMYAH 318


>02_04_0490 -
           23411742-23412944,23413071-23413595,23413666-23413747,
           23413841-23414050,23414371-23414523,23415335-23415447,
           23415476-23415622
          Length = 810

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 288 VNSVFLQVQMCNNGCGGLLIVYQLRKCINVEDCNKAAGCG 407
           V+  F ++ +  N  GG      L + INV++ +KA GCG
Sbjct: 422 VSDFFTKISILLNVVGGSSKRRDLIRDINVKEMSKALGCG 461


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,324,834
Number of Sequences: 37544
Number of extensions: 275631
Number of successful extensions: 492
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)