Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20f22
(577 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81560-4|CAB04546.1| 94|Caenorhabditis elegans Hypothetical pr... 30 1.4
U40187-3|AAA81160.2| 430|Caenorhabditis elegans Ectopic membran... 29 1.8
AF016678-6|AAB66149.2| 236|Caenorhabditis elegans Hypothetical ... 29 1.8
Z83216-2|CAB05673.1| 315|Caenorhabditis elegans Hypothetical pr... 28 5.5
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 28 5.5
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 28 5.5
AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical ... 28 5.5
AL023847-6|CAA19552.1| 297|Caenorhabditis elegans Hypothetical ... 28 5.5
Z93382-9|CAB07615.2| 462|Caenorhabditis elegans Hypothetical pr... 27 7.2
AF348168-1|AAK37546.1| 462|Caenorhabditis elegans TRF-1 protein. 27 7.2
AC084153-2|AAK84597.1| 340|Caenorhabditis elegans Sphingomyelin... 27 7.2
>Z81560-4|CAB04546.1| 94|Caenorhabditis elegans Hypothetical
protein K02E2.4 protein.
Length = 94
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -2
Query: 237 LKQIFLLVHIGCLMNLICATPTV*HY 160
+KQIFL++ CL+ +I A+PT H+
Sbjct: 1 MKQIFLVILAACLLAIILASPTGKHH 26
>U40187-3|AAA81160.2| 430|Caenorhabditis elegans Ectopic membrane
ruffles in embryoprotein 1 protein.
Length = 430
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +2
Query: 38 FKIGKSATVKWILIRLSNLFIHRHSTLKYLSRHVY 142
F++ S+T++ ++IRLS F +H TL +R +Y
Sbjct: 347 FEVSPSSTLESLIIRLSERFHLKHPTLATSTRKLY 381
>AF016678-6|AAB66149.2| 236|Caenorhabditis elegans Hypothetical
protein K07E8.3 protein.
Length = 236
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +2
Query: 218 SKKICFNFLVGNARIDVVRIILFC*FSVSSGSNV**RLWWFTNCLPAEKVHK 373
SKK F F++ + + D V + FC F+ N+ + W++ C EKV K
Sbjct: 139 SKKEVFCFVITDDKGDSVNVAAFCEFADWLYENLKEKQWYYLYCGLIEKVCK 190
>Z83216-2|CAB05673.1| 315|Caenorhabditis elegans Hypothetical
protein C08F11.2 protein.
Length = 315
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 279 FYFVNSVFLQVQMCNNGCGGLLIVYQLRKCINVED 383
F+ VN L + NN LLIVY RK +++ D
Sbjct: 19 FHIVNVCLLTINFANNIFFVLLIVYNRRKKLDLRD 53
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 27.9 bits (59), Expect = 5.5
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 336 GLLIVYQLRKCINVEDCNKAAGCGFF 413
G + Y R C+++++C K GC F
Sbjct: 282 GFHLSYDRRSCVDIDECAKNNGCEHF 307
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 27.9 bits (59), Expect = 5.5
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 336 GLLIVYQLRKCINVEDCNKAAGCGFF 413
G + Y R C+++++C K GC F
Sbjct: 282 GFHLSYDRRSCVDIDECAKNNGCEHF 307
>AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical
protein Y47D3B.7 protein.
Length = 1113
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -2
Query: 456 WWLFVKLHWTFWKNQRNHIQRLCYSLPHLC 367
WW V +W++ +N + R YSL C
Sbjct: 894 WWTHVLTCGIYWRSNKNELARQHYSLIRNC 923
>AL023847-6|CAA19552.1| 297|Caenorhabditis elegans Hypothetical
protein Y57A10C.10 protein.
Length = 297
Score = 27.9 bits (59), Expect = 5.5
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Frame = +3
Query: 420 SKKSNEASQITT-ILLSLYF---IPSHLVSLNFIFIGYSL 527
SKK +A+ T ILLS F IPS L+SL F+G+S+
Sbjct: 180 SKKFRQANHTTCGILLSSLFCLTIPSLLISLVETFVGFSI 219
>Z93382-9|CAB07615.2| 462|Caenorhabditis elegans Hypothetical
protein F45G2.6 protein.
Length = 462
Score = 27.5 bits (58), Expect = 7.2
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = -2
Query: 405 HIQRLCYSLPHLCTFSAGKQLVNHH 331
++ +C +P+ CTF+ GK+ + H
Sbjct: 186 NVDNVCPFVPYGCTFAGGKESIQQH 210
>AF348168-1|AAK37546.1| 462|Caenorhabditis elegans TRF-1 protein.
Length = 462
Score = 27.5 bits (58), Expect = 7.2
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = -2
Query: 405 HIQRLCYSLPHLCTFSAGKQLVNHH 331
++ +C +P+ CTF+ GK+ + H
Sbjct: 186 NVDNVCPFVPYGCTFAGGKESIQQH 210
>AC084153-2|AAK84597.1| 340|Caenorhabditis elegans Sphingomyelin
synthase protein 3 protein.
Length = 340
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = -2
Query: 279 IILTTSILAFPTKKLKQIFLLVHIGCLMNLICATPTV*HY 160
+ + ++ + K +K + + H+ CL+ +IC T + HY
Sbjct: 188 VTCSLAVAYYLPKSIKPLQWVSHVACLIGMICMTISRTHY 227
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,073,320
Number of Sequences: 27780
Number of extensions: 270638
Number of successful extensions: 551
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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