Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20f21
         (550 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0577 - 4286048-4286186,4286600-4286660,4286957-4287089,428...    31   0.80 
05_03_0652 + 16606987-16607443,16607542-16607652,16609317-16609411     28   4.3  
04_04_0861 + 28836544-28836609,28838191-28838264,28838551-288386...    27   9.9  

>07_01_0577 -
           4286048-4286186,4286600-4286660,4286957-4287089,
           4287286-4287350,4288346-4288451,4288529-4288750,
           4289619-4289852,4289948-4290037,4290605-4291507
          Length = 650

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +1

Query: 319 DVYVAKATYTNEINNTGWAFLELHTSRDS 405
           D    K+   N + N G+AFLEL TSRD+
Sbjct: 345 DSVTLKSDSNNPVCNRGFAFLELETSRDA 373


>05_03_0652 + 16606987-16607443,16607542-16607652,16609317-16609411
          Length = 220

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -2

Query: 366 CIIYFVGVSCFRYVYIGYISVIVSHGYS 283
           CII+  G+SCF +V+ G+++V   H +S
Sbjct: 193 CIIHLFGLSCF-FVFDGFLTVKKYHIFS 219


>04_04_0861 +
           28836544-28836609,28838191-28838264,28838551-28838671,
           28838832-28839143,28839241-28839345,28839447-28839901,
           28840116-28840417,28840589-28840767,28841256-28841446,
           28841595-28841728,28841875-28842113
          Length = 725

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 116 LIITYIVTPTNQTYAIKYGAA 178
           ++ TYI+ PT   YA+  GAA
Sbjct: 290 MVNTYIIVPTADDYAVSLGAA 310


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,796,255
Number of Sequences: 37544
Number of extensions: 205636
Number of successful extensions: 447
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)