Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20f20
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBCPT2R1.03 |||hypothetical protein|Schizosaccharomyces pombe|c...    27   1.8  
SPAC212.03 |||hypothetical protein|Schizosaccharomyces pombe|chr...    27   1.8  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    26   4.2  
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    26   4.2  
SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   5.5  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   7.3  
SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr 2...    25   7.3  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    25   9.6  

>SPBCPT2R1.03 |||hypothetical protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 129

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 1   EFNIAYFRYVYLKYNLN 51
           E+NI +  Y YLKYNLN
Sbjct: 112 EYNILFDCYSYLKYNLN 128


>SPAC212.03 |||hypothetical protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 129

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 1   EFNIAYFRYVYLKYNLN 51
           E+NI +  Y YLKYNLN
Sbjct: 112 EYNILFDCYSYLKYNLN 128


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 17/74 (22%), Positives = 37/74 (50%)
 Frame = -3

Query: 491 SLASVTISSKSWLTCSSILRLYLNASINGRLSGKFGFSIPHIFGIFPLIN*YFIKPCI*S 312
           ++A  ++   +W    +++ ++ N      L G FG S+P+++   P+++       I +
Sbjct: 266 TVAEASLKQMAWCGNDAVVLVHENLLT---LVGPFGGSVPYLYNHTPIVSTEVDGVRILT 322

Query: 311 NSSKYIFMKKPPAP 270
             S   F++K PAP
Sbjct: 323 KDSSE-FLRKVPAP 335


>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 559 NEINHYIIKLSSFGDDIHAIHNFDTSLIKAV 651
           NE N+++ KLS+    + A+ N    LIKA+
Sbjct: 505 NERNNFLQKLSTLDSSLAALVNVQRKLIKAL 535


>SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 140

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 511 ADFVTSVYLSEQIQSINEINHYIIKLSSFG 600
           +DF T VY+S  I  +N+I H  + + S G
Sbjct: 16  SDFKTPVYISRSISILNKIFHPCMYIYSRG 45


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 500 SLISLASVTISSKSWLTCSSILRLYLNASINGRLSGKFGFSI 375
           +++SLAS   ++K   TCS I  L L A +    +  F   +
Sbjct: 399 TVLSLASTEQANKKQKTCSQIEELLLQAELANISASSFSLQL 440


>SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -3

Query: 512 AQW*SLISLASVTISSKSWLTCSSILRLYLNAS-INGRLSGKFG 384
           A+W  ++S+A++  + +S+LT     R+Y N + +NG     FG
Sbjct: 14  AKWNVVVSVAALFNTVQSFLTPKLTKRVYSNTNEVNGLQGRTFG 57


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = +1

Query: 232 LAVTFLNVKSLYHGAGGFFMKMYFEELDHMQGFIKYQLIRGNIPNIC--GIEKPNLPDNL 405
           LA  F+NVK+LY G   +      EE   +Q    +Q  +G IP I     + P+   + 
Sbjct: 83  LAYLFINVKALYEGTQTYSFVQALEEF-CIQQLRTFQQ-QGYIPVITWPNTDSPSATTSS 140

Query: 406 PLIEAFRYSL 435
           P+     YS+
Sbjct: 141 PISRNPEYSV 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,449,091
Number of Sequences: 5004
Number of extensions: 47981
Number of successful extensions: 121
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)