Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20f20
(658 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 72 4e-13
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 52 4e-07
11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,952... 30 1.4
09_04_0623 - 19038777-19040561 29 2.5
11_01_0526 - 4140853-4141017,4141416-4141619 27 9.9
08_02_0009 + 11216532-11218687,11220727-11225998 27 9.9
08_02_0003 + 11180421-11180757,11180773-11185715 27 9.9
08_02_0002 + 11173365-11173512,11173528-11178470 27 9.9
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 72.1 bits (169), Expect = 4e-13
Identities = 47/159 (29%), Positives = 76/159 (47%), Gaps = 4/159 (2%)
Frame = +1
Query: 181 INRQIQTEQQVAQHYLSLAVTFLNVKSLYHGAGGFFMKMYFEELDHMQGFIKYQLIRGNI 360
I+ QI E + Y SL F G FF + EE DH + +KYQ +RG
Sbjct: 95 ISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNMRGGR 154
Query: 361 PNICGIEKP----NLPDNLPLIEAFRYSLKMEEQVNQLLEEIVTEANDIKDYHCADFVTS 528
+ I P + P+ + A +L +E+ VN+ L + + A+ D DFV S
Sbjct: 155 VRLQSIVTPLTEFDHPEKGDALYAMELALALEKLVNEKLHNLHSVASRCNDPQLTDFVES 214
Query: 529 VYLSEQIQSINEINHYIIKLSSFGDDIHAIHNFDTSLIK 645
+L EQ+++I +I+ Y+ +L G H + +FD L++
Sbjct: 215 EFLEEQVEAIKKISEYVAQLRRVGKG-HGVWHFDQKLLE 252
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 52.0 bits (119), Expect = 4e-07
Identities = 41/148 (27%), Positives = 63/148 (42%)
Frame = +1
Query: 202 EQQVAQHYLSLAVTFLNVKSLYHGAGGFFMKMYFEELDHMQGFIKYQLIRGNIPNICGIE 381
E + Y SL F G FF + EE DH + IKYQ +RG + I
Sbjct: 134 EYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRLQSIV 193
Query: 382 KPNLPDNLPLIEAFRYSLKMEEQVNQLLEEIVTEANDIKDYHCADFVTSVYLSEQIQSIN 561
P + P Y + + +V A+ D DFV S +L EQ+++I
Sbjct: 194 TPLTEFDHPEKGDALYGELLSACPIYVFYSMV--ASRCNDPQLTDFVESEFLEEQVEAIK 251
Query: 562 EINHYIIKLSSFGDDIHAIHNFDTSLIK 645
+I+ Y+ +L G H + +FD L++
Sbjct: 252 KISEYVAQLRRVGKG-HGVWHFDQKLLE 278
>11_03_0065 -
9522478-9525335,9525513-9526028,9526432-9527247,
9527440-9527767
Length = 1505
Score = 30.3 bits (65), Expect = 1.4
Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 4/136 (2%)
Frame = +1
Query: 169 IADLINRQIQTEQQVAQHYLSLAVTFLNVKSLYHGAGGFFMKMYFEELDHMQGFIKYQLI 348
+ +I + + E + A+ +S A+TF+ K L G + + D+ F +++
Sbjct: 486 LGSMIFEEYKKETEGAEINISQAITFV-FKQLRKICTGIQAQRSMKHSDY--NFCN-KIV 541
Query: 349 RGNIPNICGIEKP--NLPDNLPLIEAFRYSLKMEEQVNQLLEEIVTEANDIKDYHCAD-- 516
+ IP G +KP +L P + RYS K EEQ L+ + V E + D D
Sbjct: 542 Q--IPLSYGEDKPRNHLSRTCPNKDQKRYSSKYEEQERVLIIDSVNENILVCDDEIKDDE 599
Query: 517 FVTSVYLSEQIQSINE 564
+ S+ ++++++INE
Sbjct: 600 SIYSIIETDEVETINE 615
>09_04_0623 - 19038777-19040561
Length = 594
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +1
Query: 172 ADLINRQIQTEQQVAQHYLSLAVTFLNVKSLYHGAGGFFMKMYFEELDHMQ 324
A+ ++Q E Q+AQ LS + ++ + LY G F ++ +++HM+
Sbjct: 173 AEAAKARLQKEAQLAQSVLSRYGSDVSFRFLYDGVADTFAELLKSDVEHMR 223
>11_01_0526 - 4140853-4141017,4141416-4141619
Length = 122
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 304 EELDHMQGFIKYQLIRGNIPNICGIEKPNLPDNL 405
E+L G+ + I NI N CG+ PNLP +
Sbjct: 69 EQLSTRVGYGRVHSIIENILNKCGVIAPNLPTKI 102
>08_02_0009 + 11216532-11218687,11220727-11225998
Length = 2475
Score = 27.5 bits (58), Expect = 9.9
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Frame = +1
Query: 388 NLPDNL----PLIEAFRYSLKMEEQVNQLLEEIVTEANDIKDYHCAD--FVTSVYLSEQI 549
N PD+L P + RYS K EEQ L+ + V E + D D + S+ ++++
Sbjct: 1516 NSPDHLSRTCPNKDQKRYSSKYEEQERVLIIDSVNENILVCDDEIKDDESIYSIIETDEV 1575
Query: 550 QSINE 564
++INE
Sbjct: 1576 ETINE 1580
>08_02_0003 + 11180421-11180757,11180773-11185715
Length = 1759
Score = 27.5 bits (58), Expect = 9.9
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Frame = +1
Query: 388 NLPDNL----PLIEAFRYSLKMEEQVNQLLEEIVTEANDIKDYHCAD--FVTSVYLSEQI 549
N PD+L P + RYS K EEQ L+ + V E + D D + S+ ++++
Sbjct: 800 NSPDHLSRTCPNKDQKRYSSKYEEQERVLIIDSVNENILVCDDEIKDDESIYSIIETDEV 859
Query: 550 QSINE 564
++INE
Sbjct: 860 ETINE 864
>08_02_0002 + 11173365-11173512,11173528-11178470
Length = 1696
Score = 27.5 bits (58), Expect = 9.9
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Frame = +1
Query: 388 NLPDNL----PLIEAFRYSLKMEEQVNQLLEEIVTEANDIKDYHCAD--FVTSVYLSEQI 549
N PD+L P + RYS K EEQ L+ + V E + D D + S+ ++++
Sbjct: 737 NSPDHLSRTCPNKDQKRYSSKYEEQERVLIIDSVNENILVCDDEIKDDESIYSIIETDEV 796
Query: 550 QSINE 564
++INE
Sbjct: 797 ETINE 801
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,715,977
Number of Sequences: 37544
Number of extensions: 237133
Number of successful extensions: 504
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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