Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20f20
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin prot...    67   9e-12
AF016447-16|AAG24016.1|  170|Caenorhabditis elegans Ferritin pro...    65   4e-11
AF067617-4|AAC17557.1|  381|Caenorhabditis elegans Hypothetical ...    29   3.8  
AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z66565-8|CAA91481.2|  308|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U40947-1|AAC48068.1|  610|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin protein
           2 protein.
          Length = 170

 Score = 67.3 bits (157), Expect = 9e-12
 Identities = 40/143 (27%), Positives = 68/143 (47%)
 Frame = +1

Query: 181 INRQIQTEQQVAQHYLSLAVTFLNVKSLYHGAGGFFMKMYFEELDHMQGFIKYQLIRGNI 360
           +N+QI  E   +  YLS++  F            FF +   EE +H    ++ Q +RG  
Sbjct: 16  VNKQINIELYASYVYLSMSFYFDRDDVALPNIAKFFKEQSDEEREHATELMRVQNLRGGR 75

Query: 361 PNICGIEKPNLPDNLPLIEAFRYSLKMEEQVNQLLEEIVTEANDIKDYHCADFVTSVYLS 540
             +  I+KP   +    ++AF  +L +E+  N+ L ++ + A +  D H  DF+   YL 
Sbjct: 76  VVLQDIQKPENDEWGTALKAFEAALALEKFNNESLLKLHSTAGNHNDAHLTDFIEEKYLD 135

Query: 541 EQIQSINEINHYIIKLSSFGDDI 609
           EQ++SINE    +  L   G  +
Sbjct: 136 EQVKSINEFARMVANLKRVGPGV 158


>AF016447-16|AAG24016.1|  170|Caenorhabditis elegans Ferritin
           protein 1 protein.
          Length = 170

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 39/140 (27%), Positives = 63/140 (45%)
 Frame = +1

Query: 181 INRQIQTEQQVAQHYLSLAVTFLNVKSLYHGAGGFFMKMYFEELDHMQGFIKYQLIRGNI 360
           +N+QI  E   +  YLS++  F            FF +   EE  H    ++ Q +RG  
Sbjct: 16  VNKQINVELYASYVYLSMSAHFDRDDIALRNIAKFFKEQSDEERGHATELMRIQAVRGGR 75

Query: 361 PNICGIEKPNLPDNLPLIEAFRYSLKMEEQVNQLLEEIVTEANDIKDYHCADFVTSVYLS 540
             +  I+KP   +   ++EAF  +L +E   N  L ++   A    D H  +++   YL 
Sbjct: 76  VAMQNIQKPEKDEWGTVLEAFEAALALERANNASLLKLHGIAEQRNDAHLTNYIQEKYLE 135

Query: 541 EQIQSINEINHYIIKLSSFG 600
           EQ+ SINE   +I  +   G
Sbjct: 136 EQVHSINEFARHIANIKRAG 155


>AF067617-4|AAC17557.1|  381|Caenorhabditis elegans Hypothetical
           protein T04D1.2 protein.
          Length = 381

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +1

Query: 427 YSLKMEEQVNQLLEEIVTEANDIKDYHCADFVTSVYLSEQIQSINEIN-HYIIKLSSFGD 603
           Y++K+E+ +N   +EI+   ND++ +    F+   +LS ++ S+  +  H       F D
Sbjct: 264 YNIKIEDLMNNNCKEIILWNNDLQIFEITKFICH-WLSGKLPSLERLRLHMFHDWEIFED 322

Query: 604 DIHAIHN 624
            +  I N
Sbjct: 323 ILIGIDN 329


>AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical
           protein K09F6.3 protein.
          Length = 1360

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +1

Query: 493 IKDYHCA--DFVTSVYLSEQIQSINEINHYIIKLSSFGDDIHAI 618
           +KD+     D  T V L E I S+N +N   ++LSSF     AI
Sbjct: 678 VKDFEKTGKDAATKVKLKEVIASLNSLNSIGLQLSSFATPFTAI 721


>Z66565-8|CAA91481.2|  308|Caenorhabditis elegans Hypothetical
           protein T04F8.7a protein.
          Length = 308

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
 Frame = +1

Query: 130 YNYSNVKKHTACKIADLINRQIQTEQQVAQHYL----SLAVTFLNVKSLYHGAGGFFMKM 297
           YNY  +K+H+  +  +   R I T++ + Q  +     +A   L + SL   A       
Sbjct: 103 YNYPEIKQHSYMEDRNEEERHISTKEHIKQIGVPVLPGIASAILPISSLELAAAPVATDQ 162

Query: 298 YFEELDHMQGFIKYQLIRGN 357
               L H++   K+  +RG+
Sbjct: 163 NRAYLRHLENHKKFDTLRGD 182


>U40947-1|AAC48068.1|  610|Caenorhabditis elegans Hypothetical
           protein R03E9.2 protein.
          Length = 610

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 368 YVELRNQIY-LITFH*LKHLDTVLKWKNKLTNF 463
           +    +Q++ L+T   L H+DT+   KNKLTNF
Sbjct: 265 FTSFDDQVFPLMTLLKLNHIDTLNGDKNKLTNF 297


>AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.4 protein.
          Length = 309

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +1

Query: 211 VAQHYLSLAVTFLNVKSLYHGAGGFFMKMYFEELDHMQGFIKYQLI 348
           +A H+  +  TFL + S++H    +  +++F  L +  GF  Y  I
Sbjct: 13  IALHFCGIITTFLPISSIFHDNFEYLNEIWF--LVYFYGFCVYSNI 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,154,086
Number of Sequences: 27780
Number of extensions: 256036
Number of successful extensions: 647
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)