Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20f18
(636 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 31 0.18
SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.43
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po... 28 0.98
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 27 2.3
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 26 4.0
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 26 5.2
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom... 25 6.9
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 25 6.9
SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein Yip12|Schiz... 25 6.9
SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein Yip11|Schiz... 25 6.9
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 9.1
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 30.7 bits (66), Expect = 0.18
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = -3
Query: 334 SMSRRTCLDSPTFNTATGSFTASCSDMASTCITFNSSGLASGPNN 200
S+S T L P+ +T S+ + +++ T +F SSGL SGP N
Sbjct: 548 SVSSETTLVKPS---STSSYIDTTNNVLKTNSSFKSSGLTSGPRN 589
>SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 167
Score = 29.5 bits (63), Expect = 0.43
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 478 EMILSSRKMRIKEKEQGSASRMRMKIMKKVNPRAKKR 588
E +L+ RK R+KE+ + + K KK R KK+
Sbjct: 130 EALLAERKQRLKEQREKKEQKKEQKKEKKTERRKKKK 166
>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 674
Score = 28.3 bits (60), Expect = 0.98
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +3
Query: 231 LNVIQVEAMSLQ--EAVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGSG 380
LN IQ +SL+ + + V+ + HVR++ F + ++ LV+G+G
Sbjct: 556 LNEIQKSTLSLKSLQIGTILQEVMTMAREHHVRIEANFANTVLSILLVEGAG 607
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -3
Query: 364 RVNV-TGASGNSMSRRTCLDSPTFNTATGSFTASCSDMAST 245
R NV T ++ N + + + +PT +T TGS ++ S M +T
Sbjct: 57 RPNVSTSSTSNEVRKSVPVGNPTVHTKTGSSSSPASKMRNT 97
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 26.2 bits (55), Expect = 4.0
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +3
Query: 114 LSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMS 260
L +S ++ + + AE KL+ Q L+G DAK D L ++ V A S
Sbjct: 536 LYTSSENWVYSEQQLAEVRNMEKLLDAQ-LMGGDAKVDRLRLLMVFASS 583
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +2
Query: 119 IITSVRDMGSRGKSRIPTQQQARHSSSIVRSRCQTR*IKCDTG 247
+ V+D+ + K R+P +Q+ R + C+ + IKC+ G
Sbjct: 12 LFADVKDLERKKKRRVPPEQRRRVFRAC--KHCRQKKIKCNGG 52
>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 6.9
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +3
Query: 147 PEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQEAVKLPVAV 293
P+ KA Y + LVI G KP + Q++ ++ E++ LP+ +
Sbjct: 104 PKLKALYQDNYSLVIFSNQNGIPRKPSAGHTFQMKIRAIFESLDLPIVL 152
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -3
Query: 397 PIKCTGPEP*TRVNVTGASGNSMSRRTCLDSPTFNTAT 284
P + + P +RVNVT ASG+ T N +T
Sbjct: 240 PTRTSTTRPLSRVNVTNASGSISKNSTSPSKVKVNAST 277
>SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein
Yip12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 25.4 bits (53), Expect = 6.9
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -2
Query: 185 ELVAAWVFCFCLWIP 141
+L + W+FCFC +P
Sbjct: 170 DLQSQWIFCFCYKLP 184
>SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein
Yip11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 25.4 bits (53), Expect = 6.9
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -2
Query: 185 ELVAAWVFCFCLWIP 141
+L + W+FCFC +P
Sbjct: 170 DLQSQWIFCFCYKLP 184
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.0 bits (52), Expect = 9.1
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = -3
Query: 352 TGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCITFNSSGLASGPNNA*RMTSLLL 173
T S ++++ + S FNT +G T+S S S + SSG ++ + +TS ++
Sbjct: 700 TPLSNSTVAPTSTFTSSGFNTTSGLPTSSVSTPLSNSSAYPSSGSSTFSRLSSTLTSSII 759
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,261,063
Number of Sequences: 5004
Number of extensions: 39290
Number of successful extensions: 112
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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