Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20f18
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signali...    31   0.52 
AF016445-9|AAC69061.1|  156|Caenorhabditis elegans Hypothetical ...    31   0.69 
U80442-5|AAB37668.2|  794|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    29   3.7  
AF098999-6|AAC68724.2|  787|Caenorhabditis elegans Half transpor...    28   4.9  
AF039041-8|AAB94189.2|  448|Caenorhabditis elegans Hypothetical ...    28   4.9  
Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical p...    28   6.4  
AL132952-7|CAB61139.2|  670|Caenorhabditis elegans Hypothetical ...    28   6.4  
Z22174-2|CAA80130.2|  410|Caenorhabditis elegans Hypothetical pr...    27   8.5  
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati...    27   8.5  
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signaling
           pathway homologprotein 1 protein.
          Length = 1451

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 15/46 (32%), Positives = 29/46 (63%)
 Frame = +1

Query: 496 RKMRIKEKEQGSASRMRMKIMKKVNPRAKKRKCRIMPKAKLHRPRR 633
           RK + +++++  A R+R K+ K+   R KKR+ R + +A+  + RR
Sbjct: 860 RKAKKRKRDEEEAERLREKVRKREERREKKRR-RAIRRAEREKQRR 904


>AF016445-9|AAC69061.1|  156|Caenorhabditis elegans Hypothetical
           protein T05B4.13 protein.
          Length = 156

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -3

Query: 337 NSMSRRTCLDSPTFNTATGSFTASCSDMASTCITFN--SSGLAS 212
           N+  +RTC   P+  TA+ S TAS S   STC ++N  SS L S
Sbjct: 87  NTYCQRTCGRCPSSTTASSSSTASSS---STCTSYNADSSSLCS 127


>U80442-5|AAB37668.2|  794|Caenorhabditis elegans Hypothetical
           protein T20F5.6 protein.
          Length = 794

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 144 DPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQ 266
           + EA A   R+ K +   ALL PDA PD  N   ++ + +Q
Sbjct: 690 EAEANANGQRAPKNIEMPALLNPDANPDAPNFKNLQPLQVQ 730


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
           protein F57F4.4 protein.
          Length = 2090

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
 Frame = +2

Query: 314 ACTS--GH*IPRCACYIYSCSGFGASTLNWTPSPW 412
           ACT+  G  I  C CY   C+         TPSPW
Sbjct: 185 ACTNLAGTNIQGCCCYKQDCTSLAPMNNPPTPSPW 219


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 1 protein.
          Length = 2153

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
 Frame = +2

Query: 314 ACTS--GH*IPRCACYIYSCSGFGASTLNWTPSPW 412
           ACT+  G  I  C CY   C+         TPSPW
Sbjct: 185 ACTNLAGTNIQGCCCYKQDCTSLAPMNNPPTPSPW 219


>AF098999-6|AAC68724.2|  787|Caenorhabditis elegans Half transporter
           (pgp related)protein 4 protein.
          Length = 787

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -3

Query: 412 PRRWCPIKCTGPEP*TRVNVTGAS-GNSMSRRTCLDSPTFNTATGSFTA 269
           PR+   +  +GP+P   +NV G S GN+MS    L S +F+ +  S T+
Sbjct: 742 PRKRPAVARSGPQPAASINVAGPSQGNAMS----LLSTSFSQSASSVTS 786


>AF039041-8|AAB94189.2|  448|Caenorhabditis elegans Hypothetical
           protein W03F8.2 protein.
          Length = 448

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -1

Query: 636 HSSWAMQLCLWHYSTFSLFCPWVHLLHYLHPHSACASLLLFFYSH 502
           H+S    LC +   +  +F   VHL+H   P    A  +L F SH
Sbjct: 18  HTSSLKNLCTFRRRSIQVFQKIVHLVHLQTPFLLKALRILTFLSH 62


>Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical
           protein M163.11 protein.
          Length = 224

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 343 SGNSMSRRTCLDSPTFNTATGSFTAS-CSDMASTCITFNSSGLAS 212
           S NS S  +  DS +  ++T S T + C D  STC ++ ++G  +
Sbjct: 104 SSNSSSSTSSSDSTSVVSSTSSSTTTTCVDSFSTCTSWAANGFCT 148


>AL132952-7|CAB61139.2|  670|Caenorhabditis elegans Hypothetical
           protein Y51H4A.7 protein.
          Length = 670

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = +1

Query: 1   GSPFRRFECNGVARERVAKNLNKLVKSS*RTSFSMVSPFHHHISQRHGIQRQKQNTH--- 171
           GS  R    +   R  +A   N+LVKS   ++  ++S  HH +S      R+  N +   
Sbjct: 502 GSQARILYSDRAGRVALASAFNELVKSGKVSAAIVISRDHHDVSGTDSPFRETSNVYDGS 561

Query: 172 AATSSSFVKHC 204
           A T+   V++C
Sbjct: 562 AFTADMAVQNC 572


>Z22174-2|CAA80130.2|  410|Caenorhabditis elegans Hypothetical
           protein K01B6.3 protein.
          Length = 410

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 630 SWAMQLCLWHYSTFSLFCPWVHLLHY 553
           SWA+ +C+   STF+L C    +LHY
Sbjct: 80  SWALLVCIIE-STFALICFLAVMLHY 104


>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
           protein protein.
          Length = 1439

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 73  VKSS*RTSFSMVSPFHHHISQRHGIQRQKQNTHAATSSS 189
           V SS +T  +  S FHHH SQ  G  R  +N  A T+++
Sbjct: 700 VPSSSQTMATTSSSFHHHSSQA-GPSRDIENGEAPTATA 737


>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical
           protein C04D8.1 protein.
          Length = 1317

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 73  VKSS*RTSFSMVSPFHHHISQRHGIQRQKQNTHAATSSS 189
           V SS +T  +  S FHHH SQ  G  R  +N  A T+++
Sbjct: 578 VPSSSQTMATTSSSFHHHSSQA-GPSRDIENGEAPTATA 615


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,847,976
Number of Sequences: 27780
Number of extensions: 232741
Number of successful extensions: 711
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)