Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20f17
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    27   2.9  
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    26   5.1  

>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
            Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -2

Query: 251  IIQRYRHGAVWYFAGFVSSFCVRHFVHRALRAVRKNAREQ 132
            ++  Y+H   W   G+ +S+C +HF+H       ++ R+Q
Sbjct: 971  LLNIYQH---WQRNGYSNSWCSKHFLHSKTLKRARDIRQQ 1007


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 282 FDWQDASLNDRERKELSKLFDAVEIMT 362
           F+ + ASLN   + EL K  +AVE++T
Sbjct: 34  FEREQASLNMHVKTELEKHVEAVEMLT 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,469,126
Number of Sequences: 5004
Number of extensions: 47466
Number of successful extensions: 156
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)