Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20f17
         (627 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0023 + 31089351-31089822,31089921-31090795                       31   0.99 
04_04_0670 - 27128153-27129075,27129152-27129266,27129348-271295...    30   1.7  
04_03_0859 + 20367738-20368391                                         30   1.7  
06_01_0473 + 3359152-3359198,3359568-3359768,3360502-3360646,336...    29   3.0  
09_06_0078 + 20727684-20728036,20728871-20728895,20729218-207293...    29   4.0  
08_02_0459 + 17420156-17420976,17422291-17424199                       28   5.3  
03_05_0549 - 25444234-25446792                                         28   7.0  
05_06_0193 + 26279105-26279229,26279725-26279833,26280362-262804...    27   9.2  

>03_06_0023 + 31089351-31089822,31089921-31090795
          Length = 448

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
 Frame = +3

Query: 261 KLKESGIFDWQDASLNDRERKELSKLFDAVEI----MTTSRNRQPPNVQNMFSTLRLV 422
           KL E GI D +  ++   E  +L    DA EI    + +++ R+  N+QN+F T RL+
Sbjct: 147 KLIEDGILD-ETGNVKKHEMVQLMPPIDAAEIPWVSLGSTQERRRYNIQNVFKTNRLM 203


>04_04_0670 -
           27128153-27129075,27129152-27129266,27129348-27129537,
           27129652-27129786,27129874-27129971,27131075-27131764
          Length = 716

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = +3

Query: 129 LLFAGVLSYGTQCPMHEMTDAKAAYKSGEIPDSSMPITLDNIKA 260
           LL   +LS+G   P+  ++D K  + S +IP+SSM  +L   KA
Sbjct: 332 LLLGAILSWGVMWPL--ISDLKGDWYSADIPESSMK-SLQGYKA 372


>04_03_0859 + 20367738-20368391
          Length = 217

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = +3

Query: 381 PPNVQNMFSTLRLVERVVKKQLKEGQISESLAGKFQWEKLSTRQRRE 521
           P +     ST    E+V KK+LKE +  + L G+   E+L  R RRE
Sbjct: 87  PKHAAEGSSTASEEEQVAKKELKEAEEDDGLQGESARERLK-RHRRE 132


>06_01_0473 +
           3359152-3359198,3359568-3359768,3360502-3360646,
           3361141-3361407,3361608-3362150
          Length = 400

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -3

Query: 478 PAKDSDICPSLSCFLTTLSTRRRVENMFCTFGGCRLRDV 362
           P K S+   SLSC  TT S+ +R    F   G  RLRD+
Sbjct: 15  PVKSSE-STSLSCSTTTTSSFQRFLLFFFVSGAARLRDL 52


>09_06_0078 +
           20727684-20728036,20728871-20728895,20729218-20729347,
           20729441-20729571,20729654-20729742,20730127-20730203,
           20730279-20730412
          Length = 312

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = -1

Query: 165 IACRKKERPRTVKSI 121
           IACR+++RPRTVK I
Sbjct: 157 IACRQEDRPRTVKEI 171


>08_02_0459 + 17420156-17420976,17422291-17424199
          Length = 909

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 103 RTLIS-CYGFYCSRAFFLTARNALCT 177
           R LIS C+GF C R F+LT +  + T
Sbjct: 812 RLLISGCHGFSCLRQFYLTGQQPIFT 837


>03_05_0549 - 25444234-25446792
          Length = 852

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
 Frame = +3

Query: 324 ELSKLFDAVEIMTTSRNR--QPPNVQNMFSTLRLVERVVKKQLKEGQISESLAGKFQWEK 497
           E   L   V+IM  SR    Q   V  +   LR VE +  +   +  ++ +L   ++   
Sbjct: 765 EADGLRPVVDIMVESRTEALQRRAVWAVERILR-VEEIAGEVAADQTVASALVEAYRNGD 823

Query: 498 LSTRQRRERPLYHLDKFAN 554
             TRQ  ER L HLD+  N
Sbjct: 824 PRTRQTAERALRHLDRIPN 842


>05_06_0193 +
           26279105-26279229,26279725-26279833,26280362-26280437,
           26280527-26281472,26281564-26281615,26281945-26282067,
           26282144-26282219,26282308-26282492,26282615-26282806,
           26282895-26282963,26283745-26283954,26285602-26285751,
           26286283-26286344,26286428-26286503,26286575-26286745
          Length = 873

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -3

Query: 502 DSFSHWNFPAKDSDICPSL--SCFLTTLSTRR 413
           DS SHW + A D  I PS+   C LT +   R
Sbjct: 745 DSLSHWIYAASDMFIVPSMFEPCGLTQMIAMR 776


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,386,321
Number of Sequences: 37544
Number of extensions: 291173
Number of successful extensions: 784
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)