Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20f16
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    30   0.27 
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    27   1.9  
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    27   2.5  
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos...    27   2.5  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    27   2.5  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   3.3  
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ...    26   4.4  
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po...    26   5.8  
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch...    26   5.8  

>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
 Frame = -2

Query: 456 TPSIMLSLMLSP*VKRRTLITTCTMMITSKKIAYVTTMQ*LSRIAPQHPKNAITNITAPT 277
           +PS+ LS   +  +   +     T++  S K    T        A   P+N  T IT+PT
Sbjct: 320 SPSVALSTSSTTTITNASTPAANTIISRSSKPTDTTNS---ISFANTTPENTSTQITSPT 376

Query: 276 TMKIHGP-TARWVFSKS--LTMVQFIRNATPIPTSSRPRSAT 160
            +    P T+  V + S  +T    +  +TPI +SS   S+T
Sbjct: 377 AVNSSTPITSSSVLNSSTPITSSSILNTSTPITSSSVLNSST 418


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 568 LRPVHVARVLLRQRRASSLPSPATTARSTPRIPAAVP 678
           ++P   + + LRQ    +  +P+ +A STP  P  VP
Sbjct: 9   MQPTPTSSIPLRQMSQPTTSAPSNSASSTPYSPQQVP 45


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 437 ESIMDGVGVLFKKRSDANADEAAEAVFSELQRQ-FECC 547
           ESI+  + V FK+R+D N  E     F EL +Q F  C
Sbjct: 588 ESIVQSLSVAFKERNDRNEQE-IPFFFEELLKQLFTLC 624


>SPBP35G2.05c |cki2||serine/threonine protein kinase
           Cki2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
 Frame = -2

Query: 402 LITTCTMMITSKKIAYVTTMQ*LSRIAPQHPKNAITNITAPTTMKIHGPTAR---WVFSK 232
           L   C    + K +A +T  Q LSR+   H KN +     P    I  P++R    V+  
Sbjct: 95  LFEWCGRRFSVKTVA-MTAKQMLSRVQTIHEKNLVYRDIKPDNFLIGRPSSRNANMVYMV 153

Query: 231 SLTMVQFIRNATP---IPTSSRPR-SATTRLKKNSTY 133
              M ++ R+      IP S R   S T R    +T+
Sbjct: 154 DFGMAKYYRDPKTKQHIPYSERKSLSGTARYMSINTH 190


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 418 GEEEDANHHLHNDDHQQEDCVRDDH 344
           G ++  +HH H+ DH   D    DH
Sbjct: 10  GSDDSTHHHTHDYDHHNHDHHGHDH 34


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 118 NEFCEICAILLQPGRRAPRPAASGDWSSVPDELDHGQR 231
           +E  E+    L+P  RAPRP+ S    S   E+ H  R
Sbjct: 77  DEKLEVDFAFLEPPERAPRPSISTRSRSQSPEVQHRDR 114


>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 429

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 268 LHSRRGCNVRDRVLGMLWSDTRESLHGRHVRNLLAGDHH 384
           L SRR  N + +V    WS+  E +H +  RNL   + H
Sbjct: 12  LFSRRFPNWKRKVQTDSWSNVPEHIHSKIGRNLFQKEGH 50


>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 361

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 330 RIAPQHPKNAITNITAPTTMKIHG 259
           RI P  P N + NIT P+T+  HG
Sbjct: 175 RIFP--PTNLVANITLPSTLHPHG 196


>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
           Yml6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 231 SLTMVQFIRNATPIPTSSRPRSATTRLKKNSTYFTKLVPHPML 103
           SL + +F +  T +    +P S T  +  NS+ FTK  P P L
Sbjct: 218 SLIVEKFAQRNT-LSDMDQPASLTAYVDANSSSFTKSKPEPSL 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,427,639
Number of Sequences: 5004
Number of extensions: 46433
Number of successful extensions: 155
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)