Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20f16
(679 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0310 - 8842286-8843314 32 0.37
03_02_0889 - 12195322-12195894 31 0.64
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600... 31 1.1
10_08_0936 - 21679002-21679800,21679893-21680116,21681174-216813... 29 4.5
03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,970... 29 4.5
10_06_0171 + 11466934-11466990,11467073-11468312,11468450-114685... 28 6.0
02_05_0688 - 30918499-30919602 28 6.0
02_04_0260 - 21350060-21350269,21350544-21350604,21350834-213509... 28 6.0
02_01_0393 - 2863335-2864534 28 6.0
12_01_1035 + 10656345-10656347,10656694-10656864,10656922-106577... 28 7.9
11_03_0128 - 10437407-10438049,10438097-10438272 28 7.9
06_03_1269 + 28865236-28865819,28866124-28866754 28 7.9
>02_02_0310 - 8842286-8843314
Length = 342
Score = 32.3 bits (70), Expect = 0.37
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -1
Query: 400 NHHLHNDDHQQEDCVRDDHAVTLAYRSTA-SQERDHEHYSPDDYEDPRTDSKM 245
+HH H+D++++++ + D A R + + R H H+ DD+E + M
Sbjct: 193 HHHHHHDENEEDEHEQADEASPAVERLISFHRRRHHHHHHEDDHEQREEGAPM 245
>03_02_0889 - 12195322-12195894
Length = 190
Score = 31.5 bits (68), Expect = 0.64
Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 3/110 (2%)
Frame = -1
Query: 673 PQPGFAASTVQLLPAKVERML-FFDATGLGQRELAVVDSASVTAAFELSLQFREDSLGGL 497
P P F L ++ R+ FD G G+ L + SA E ++GG
Sbjct: 16 PSPSFRLRNGSLNALRLRRVFDLFDRNGDGEITLDEMASALDALGLGADRAGLEATVGGY 75
Query: 496 VCVSVRSLFE*HADAIHNALLDAL--AVGEEEDANHHLHNDDHQQEDCVR 353
+ L +A+H AL DAL V EEE +D+ ++ R
Sbjct: 76 IPAGAAGLRFGDFEALHRALGDALFGPVEEEEPGKQGEDDDEGDMKEAFR 125
>06_03_1283 - 28957729-28959258,28959354-28959550,28959824-28960026,
28960097-28960424,28960524-28960661,28960765-28961020,
28961529-28961626,28963104-28963367,28964395-28964584
Length = 1067
Score = 30.7 bits (66), Expect = 1.1
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -1
Query: 430 ALAVGEEEDANHHLHNDDHQQEDC 359
++++ E D + H HN++H+ EDC
Sbjct: 969 SISIEESSDHHEHHHNEEHKAEDC 992
>10_08_0936 -
21679002-21679800,21679893-21680116,21681174-21681361,
21681505-21682597
Length = 767
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -1
Query: 415 EEEDANHHLHNDDHQQEDCVRDDHAVTLAYRSTASQERDHEHYSPDDYEDPRT-DSKMG 242
EEE A +LH ++ED V DD E D +HY+ + R+ + +MG
Sbjct: 205 EEEKARGYLHPHHLKEEDEVDDDDDEREEEMHCGGWEDDDDHYASTTTSETRSEEGEMG 263
>03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,
9700145-9700235,9700698-9700759,9701256-9702962,
9703789-9703870,9703972-9704057,9704855-9704968,
9705113-9705163,9705261-9705358,9707084-9707546
Length = 1367
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -1
Query: 433 DALAVGEEEDANHHLHNDDHQQEDCVRDDHAVTLAYRSTASQERDHEHYSPDD 275
DA G E+A H H C RDD V + +S+ +D++ DD
Sbjct: 1209 DAKNCGSGEEAGDHDSERTHGTLPCSRDDEPVHVPSDFGSSKSQDNQRDEDDD 1261
>10_06_0171 +
11466934-11466990,11467073-11468312,11468450-11468596,
11469650-11470140
Length = 644
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 433 DALAVGEEEDANHHLHNDDHQQEDCVRDDHAV 338
D + EE+D +HH H+ H D +HA+
Sbjct: 320 DTFRIAEEDDDDHHHHHHYHGDADDDDGEHAM 351
>02_05_0688 - 30918499-30919602
Length = 367
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = -1
Query: 595 GLGQRELAVVDSASVTAAFELSLQFREDSLGGLVCVSVRSLFE*HADAIHNALLDAL 425
G+G+ AV S + FE+ FR D++ GL+ SVR+ E + N L D L
Sbjct: 101 GVGELRTAVAASFP-SLRFEI-YPFRADAVTGLISASVRAALEAPLNYARNYLADLL 155
>02_04_0260 -
21350060-21350269,21350544-21350604,21350834-21350901,
21351274-21351483,21351684-21351724,21351923-21351972,
21352084-21352172,21352265-21352339,21352539-21352656,
21352689-21352771,21352854-21352970,21353857-21354074,
21354184-21354241,21354356-21354508
Length = 516
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -2
Query: 318 QHPKNAITNITAPTTMKIHGPTARWVFSKSLTMVQFIRNATPIP 187
QH +N I MK H P +W+ L+ Q I++ P
Sbjct: 187 QHWENKIQASDENGMMKEHSPLGKWIIGMKLSGPQMIKHVQEFP 230
>02_01_0393 - 2863335-2864534
Length = 399
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 574 PVHVARVLLRQRRASS-LPSPATTARSTPRIPAA 672
P H LL+ R+ P AT ARS PR PA+
Sbjct: 63 PAHATAELLQPRKDEPPAPGSATAARSRPRPPAS 96
>12_01_1035 +
10656345-10656347,10656694-10656864,10656922-10657728,
10657881-10659092
Length = 730
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 529 TTVRMLR*HWRYQLRPVHVARVL--LRQRRASSLPSPATTARSTPRIPAAVP 678
TT+ R +WR ++ A+ L L Q++ SS P P + P++PA P
Sbjct: 671 TTIPSNR-YWRTPVKSPVPAKKLEQLAQKKPSSAPKPKKVWKEKPKMPAPSP 721
>11_03_0128 - 10437407-10438049,10438097-10438272
Length = 272
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 582 RCPSPVASKKSILSTFAGNNCTVDAANPGC 671
RCPSP AS +S+ S G+ C ++P C
Sbjct: 231 RCPSPTASSESLGSW--GSGCRSHLSSPTC 258
>06_03_1269 + 28865236-28865819,28866124-28866754
Length = 404
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 277 RRGCNVRDRVLGMLWSDTRESLHGRHVRN 363
RR C+V D V +W ++HGR R+
Sbjct: 214 RRRCSVFDVVTAAIWQCRTRAIHGRRCRS 242
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,946,822
Number of Sequences: 37544
Number of extensions: 349974
Number of successful extensions: 1373
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1365
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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