Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20f15
         (332 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0035 + 22304934-22305305,22305335-22305904,22306354-22306836     27   4.9  
06_03_0875 - 25584789-25585307,25585424-25585570,25585734-255858...    26   6.4  
01_03_0092 - 12386381-12386401,12386580-12386968,12388346-123885...    26   6.4  
03_06_0412 + 33749039-33749077,33749585-33749728,33750110-337508...    26   8.5  

>04_04_0035 + 22304934-22305305,22305335-22305904,22306354-22306836
          Length = 474

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -3

Query: 279 SSPHLYLAHEVSHWSQPNCEH--KRAVQQSLAKMAFIP 172
           SSP L LA  V+ W +P C+     A+ ++ A M   P
Sbjct: 56  SSPRLNLASFVTTWMEPECDRLILEAINKNYADMDEYP 93


>06_03_0875 -
           25584789-25585307,25585424-25585570,25585734-25585897,
           25586015-25586172,25586536-25586904,25586998-25587209,
           25587439-25588059,25588561-25588699,25588968-25589044,
           25589120-25589800,25590641-25590889
          Length = 1111

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 181 CHLGEALLHCAFMLTVWLTPMAYFMSQIKVWRREYM 288
           CH+ + +L  AF+L+VWL  + +    I  WR  ++
Sbjct: 117 CHVLQFVLRLAFVLSVWLMIIPFITYWI--WRLTFV 150


>01_03_0092 -
           12386381-12386401,12386580-12386968,12388346-12388541,
           12388872-12388941,12389599-12389822
          Length = 299

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 172 RNKCHLGEALLHCAFMLTVWLTPMAYFMSQIKVW 273
           R +C L +    C+F+  V+   +A   S IK+W
Sbjct: 262 RPRCFLDDVSDFCSFVFYVFFIWLARLASAIKIW 295


>03_06_0412 +
           33749039-33749077,33749585-33749728,33750110-33750862,
           33750959-33751778,33751893-33752140,33752285-33752391,
           33753098-33753248,33753339-33753530,33753905-33754042
          Length = 863

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 85  TKLLRRPLPQQTMLKRNWTQTGMIIVIPPRNKCHLGEALLH-CAFMLT 225
           TK +RR    QT  + +W+ + +I  I PR      EAL H   F+LT
Sbjct: 572 TKNIRRT---QTKSRFSWSDSRLIDTIEPREYIDNKEALFHGLDFLLT 616


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,642,537
Number of Sequences: 37544
Number of extensions: 162655
Number of successful extensions: 345
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)