Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20f13
         (726 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80931-1|AAB37998.2|  343|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z74472-2|CAA98945.1|  188|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z36753-8|CAA85336.1|  326|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z72508-5|CAA96638.1|  525|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U41011-4|AAA82287.1|  294|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AL132948-18|CAD31819.1|  390|Caenorhabditis elegans Hypothetical...    28   7.8  

>U80931-1|AAB37998.2|  343|Caenorhabditis elegans Hypothetical
           protein T01B11.1 protein.
          Length = 343

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = -2

Query: 431 TILVSSFHLLQLFYTLLKQKNRDYFQWVIWLYSQN 327
           T+L+S   + + FY L+K+K  +YF ++I + + N
Sbjct: 24  TVLISLLLVAKAFYNLMKRKRSNYFVFLISIIAAN 58


>Z74472-2|CAA98945.1|  188|Caenorhabditis elegans Hypothetical
           protein F23H12.2 protein.
          Length = 188

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +2

Query: 182 EPAHDLLDKVILRQLDLLEQKIKCELNIESNVNNGSIHLAKSRYIMGQS 328
           + A D+ D   +++  L E ++  EL    NV+ G++H+A +  + G+S
Sbjct: 69  DAAPDVTDPSQMQRFFLQEVQLGEELMAAGNVDEGAVHIANAVMLCGES 117


>Z36753-8|CAA85336.1|  326|Caenorhabditis elegans Hypothetical
           protein T09A5.9 protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
 Frame = +2

Query: 209 VILRQLDLLEQKIKCELNIESNVNNGSIHLAKSRYIMGQSSVSTTKLPTESSPDFSASIM 388
           V L  LDL E ++    ++ES VN  S+ L+ +R          TKL T     +  S  
Sbjct: 81  VTLTSLDLYENQLTEISHLESLVNLVSLDLSYNRIRQINGLDKLTKLETL----YLVSNK 136

Query: 389 CKTIEE-DGMTKLKLYQNKENTIVPLHWFGVLV 484
            + IE  + +T+LKL +  +N I  +   G LV
Sbjct: 137 IEKIENLEALTQLKLLELGDNRIKKIENIGHLV 169


>Z72508-5|CAA96638.1|  525|Caenorhabditis elegans Hypothetical
           protein F28H7.6 protein.
          Length = 525

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 24/120 (20%), Positives = 59/120 (49%), Gaps = 11/120 (9%)
 Frame = +2

Query: 212 ILRQLDLLEQKIKCELNIESNVN--NGSIHLAKSRYIMGQSSVSTTKLPTESSPDFSASI 385
           IL +++  E+  + ++++E+ VN  NG      ++++  +      K     +P F ++I
Sbjct: 14  ILHKIETFEENTEFDVHVETLVNTKNGGDPSFLTKFVNDKGIPQGLKGENYINPSFCSNI 73

Query: 386 MCKTIEEDGMTKLKLYQNKENTIVPLH-W-------FGV-LVPQNLHMAQKIFQTTLSYV 538
             + + ++  +   + Q+K  +++ L+ W       FGV L+       + ++QT L+Y+
Sbjct: 74  DDQVLTDEKYSNCTILQSKNGSVLKLNFWTNFDTFKFGVNLLELKNVTLELVYQTELTYL 133


>U41011-4|AAA82287.1|  294|Caenorhabditis elegans Hypothetical
           protein D2024.4 protein.
          Length = 294

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +2

Query: 518 QTTLSYVVECSNIQLQLEENMKNINALRKYLN 613
           +TT  +   C N++  ++EN   +N L+K+L+
Sbjct: 105 KTTCKFCSLCENVKENVKENESKLNKLKKFLS 136


>AL132948-18|CAD31819.1|  390|Caenorhabditis elegans Hypothetical
           protein Y39B6A.22 protein.
          Length = 390

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 389 CKTIEEDGMTKLKLYQNKENTIVPLH 466
           C    + G TKLK Y NK ++ V L+
Sbjct: 101 CNGFPDSGHTKLKFYSNKSSSFVDLN 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,264,473
Number of Sequences: 27780
Number of extensions: 316764
Number of successful extensions: 954
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)