Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20f11
(739 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 218 8e-58
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 31 0.17
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 29 0.52
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 29 0.91
SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M... 29 0.91
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 27 2.1
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 27 3.7
SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc... 26 4.9
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 26 6.4
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 25 8.5
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 218 bits (532), Expect = 8e-58
Identities = 96/186 (51%), Positives = 137/186 (73%)
Frame = +2
Query: 182 LLDFNQKLDINLLDNIVGCLYSAVGDQQRVAQDILTALKEHPDAWTRVDTILEYSQNQET 361
+L F+++LD+ LLD +V Y VG +Q+ AQ +LT + HPDAW++ +ILE S+ +T
Sbjct: 4 ILAFDRELDVALLDRVVQTFYQGVGAEQQQAQQVLTQFQAHPDAWSQAYSILEKSEYPQT 63
Query: 362 KYYALQILEQVILTRWKILPRNQCEGIKKYIVGLIIKNSSDPVTMESNKVYLKKLNMILI 541
KY AL +L+++I TRWK+LP+ Q GI+ YIV ++IKNSSD ++ K +L KL++ L+
Sbjct: 64 KYIALSVLDKLITTRWKMLPKEQRLGIRNYIVAVMIKNSSDETVLQQQKTFLNKLDLTLV 123
Query: 542 QVLKREWPHNWETFISDIVGASKTNESLCQNNMEIFKLLSEEVFMFSTGQLTQTKAKHLK 721
Q+LK+EWPHNW FI +IV ASKTN SLC+NNM + +LLSEE+F +S Q+TQ K K+LK
Sbjct: 124 QILKQEWPHNWPNFIPEIVQASKTNLSLCENNMIVLRLLSEEIFDYSAEQMTQLKTKNLK 183
Query: 722 DTMCSE 739
+ MC E
Sbjct: 184 NQMCGE 189
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 31.1 bits (67), Expect = 0.17
Identities = 13/71 (18%), Positives = 35/71 (49%)
Frame = +2
Query: 362 KYYALQILEQVILTRWKILPRNQCEGIKKYIVGLIIKNSSDPVTMESNKVYLKKLNMILI 541
++++L + E + WK + E + ++ + +++++ + S KL + I
Sbjct: 70 QHFSLSLFETSVGMNWKSFSNKEKESVTSFLCKISLEDNN----LLSVHFVRSKLASVFI 125
Query: 542 QVLKREWPHNW 574
++ KR+W + W
Sbjct: 126 EIAKRDWYNTW 136
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 29.5 bits (63), Expect = 0.52
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +3
Query: 78 MWINQNNFDFG--KKGTN*LNKYILPEW 155
M+IN N FDFG +K + +N ILP W
Sbjct: 2081 MFINGNGFDFGSRQKESTPINDVILPPW 2108
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 28.7 bits (61), Expect = 0.91
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = -3
Query: 305 DVPSKQSVYPEQHVVDPQQQN 243
DV +K S + E+H++DP+++N
Sbjct: 603 DVNTKDSSFAERHIIDPEKRN 623
>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 388
Score = 28.7 bits (61), Expect = 0.91
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -3
Query: 671 ILLHSTT*IFPYCFDRDFHSSLRHPQCH**KFPN 570
++L+ TT + P+ DR+ H + HP+ + FP+
Sbjct: 252 LILNETTFVEPFSIDRESHRVITHPRVYPKIFPH 285
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 2.1
Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 2/138 (1%)
Frame = +2
Query: 281 ILTALKEHPDAWTR--VDTILEYSQNQETKYYALQILEQVILTRWKILPRNQCEGIKKYI 454
+ T L+ + D + R I++ Q + + ++++L Q++L + E K
Sbjct: 1069 LFTPLETNSDFFIRELCGNIIDLKQPKRREI-SIEVLYQILLQNHEF-----SESCYKRH 1122
Query: 455 VGLIIKNSSDPVTMESNKVYLKKLNMILIQVLKREWPHNWETFISDIVGASKTNESLCQN 634
+I S D T NK+ LK + I + K H+W + +VG T+ S N
Sbjct: 1123 FDRLIWQSLD--TTPDNKL-LKNILYIWLNDYKDSDIHSWVNILLFLVGIKNTSSSERSN 1179
Query: 635 NMEIFKLLSEEVFMFSTG 688
+I L E+ + G
Sbjct: 1180 EQDIQNNLDEDTVSLAYG 1197
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -1
Query: 367 IFSFLILRIFKYCINTSPSIRMFLQSSQYILSNTLLIP 254
I SF++L +F+ + S +FL + ++S LLIP
Sbjct: 505 IISFILLAVFRPFVGFKNSFCVFLVALTRVVSFALLIP 542
>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 26.2 bits (55), Expect = 4.9
Identities = 16/73 (21%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +2
Query: 302 HPDAWTRVDTILEYSQNQETKYYALQILEQVILTR--WKILPRNQCEGIKKYIVGLIIKN 475
H D + + T+L S+N TK +L++L +++L R ++ R ++ +++++
Sbjct: 202 HFDEFFKQYTVLLKSENYVTKRQSLKLLGEILLNRANRSVMTRYISSAENLKLMMILLRD 261
Query: 476 SSDPVTMESNKVY 514
S + E+ V+
Sbjct: 262 KSKNIQFEAFHVF 274
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 364 ILCITNIRTSNTNEMENITKKSV*GYKKIY 453
ILCI+N R T E + K+ YKK++
Sbjct: 788 ILCISNGRIVETGTHEELIKRDGGAYKKMW 817
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 25.4 bits (53), Expect = 8.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 104 FWKKGNKLTK*IYFTRMATLEQQASKLLDFNQ 199
FW+KG++ + + + A L QQ L F+Q
Sbjct: 277 FWQKGSRTKRPVMKIKDAHLPQQGISCLSFSQ 308
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,078,592
Number of Sequences: 5004
Number of extensions: 64088
Number of successful extensions: 172
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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