Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20f11
         (739 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta f...   196   1e-50
Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta
           family protein 4,isoform a protein.
          Length = 1080

 Score =  196 bits (479), Expect = 1e-50
 Identities = 92/190 (48%), Positives = 128/190 (67%)
 Frame = +2

Query: 170 QASKLLDFNQKLDINLLDNIVGCLYSAVGDQQRVAQDILTALKEHPDAWTRVDTILEYSQ 349
           +A +      ++D+ LLD +V  +    G +Q  A  IL +LKE  D+WT+VD IL+YSQ
Sbjct: 11  EAKRQFAQGDRIDVTLLDQVVEIMNRMSGKEQAEANQILMSLKEERDSWTKVDAILQYSQ 70

Query: 350 NQETKYYALQILEQVILTRWKILPRNQCEGIKKYIVGLIIKNSSDPVTMESNKVYLKKLN 529
             E+KY+ALQILE VI  +WK LP+ Q EGIK YI+  + + SSD   ME +++ L KLN
Sbjct: 71  LNESKYFALQILETVIQHKWKSLPQVQREGIKSYIITKMFELSSDQSVMEQSQLLLHKLN 130

Query: 530 MILIQVLKREWPHNWETFISDIVGASKTNESLCQNNMEIFKLLSEEVFMFSTGQLTQTKA 709
           ++L+Q++K++WP  W TFI+DIV +SK NE++C NNM I  LLSEEVF F +  LTQ K 
Sbjct: 131 LVLVQIVKQDWPKAWPTFITDIVDSSKNNETVCINNMNILSLLSEEVFDFGSQNLTQAKE 190

Query: 710 KHLKDTMCSE 739
           +HLK   C +
Sbjct: 191 QHLKQQFCGQ 200


>Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical protein
            F52B5.3 protein.
          Length = 1425

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 136  NIFYQNGNLRTTGI*TFGFQSKIGHQFIGQ 225
            +I YQ GN  T G+   GF    G+QF G+
Sbjct: 1382 HIPYQGGNFNTRGVSRGGFSYTSGNQFRGR 1411


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,639,579
Number of Sequences: 27780
Number of extensions: 344733
Number of successful extensions: 942
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)