Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20f09
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    43   3e-05
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    31   0.14 
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    29   0.73 
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    28   0.97 
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    27   1.7  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.7  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    27   2.2  
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch...    27   3.0  
SPAC11D3.09 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Manual    27   3.0  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    27   3.0  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    27   3.0  
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    26   3.9  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    26   5.2  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    25   6.8  
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po...    25   6.8  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    25   9.0  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.0  

>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 25/76 (32%), Positives = 37/76 (48%)
 Frame = +3

Query: 366 MSVQIISYGATITSIQXXXXXXXXXXXXAGFDTLEEYFQPRNPYFGATIGRYANIIRDAT 545
           + V I +YGA + +++             GF+    Y    NP+FGATIGR+AN I +  
Sbjct: 378 LEVSIANYGALVQAVRYKGRNLVN-----GFNDFSRYKLKENPFFGATIGRFANRIANGQ 432

Query: 546 MVVRPSGRMYMLSNNK 593
             V   G +Y L  N+
Sbjct: 433 FEV--DGHLYTLCKNE 446


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 453 GFDTLEEYFQPRNPYFGATIGRYANIIRDATMVVRPSG 566
           GFD L +YF  RN Y    +   +N ++DA ++  PSG
Sbjct: 560 GFDILYDYFVKRNRY--GVLHSKSNSVKDAYIIPMPSG 595


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -1

Query: 554 HHHCGIPNDVCVAPNSSSEIWVSWLEIFF*SVESCDHIIRNAFFVRN 414
           +HHCGI    CV  N  SE ++        + +S +H I + FF  N
Sbjct: 209 NHHCGIYRSNCVVINKDSE-FLQMCRPINTTQDSNEHSIGSLFFYLN 254


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
 Frame = +3

Query: 66  FPVKMAEEGDEKASGDVEEDTKTVTPQPEPKIPDVELIVDGFGLMPKSMKVPKNRTSNAF 245
           +P+++    + +     EE+T+ V  + + K P +E + D      K  K  K  T+   
Sbjct: 204 YPIQLVVTREVEKEVPEEEETEEVKNEEDDKAPKIEEVDDESEKKEKKTKKVKETTTETE 263

Query: 246 EESKQ----MLKEIKVTNEEAKSPCSSSTN 323
           E +K          +VT EE  S   S TN
Sbjct: 264 ELNKTKPIWTRNPSEVTKEEYASFYKSLTN 293


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 168 VELIVDGFGLMPKSMKVPKNRTSNAFEESKQMLKE 272
           +E ++D F  + + +K+P+    NA E  K +LKE
Sbjct: 384 IERLLDSFPAIFQDVKIPEPVVGNALEVVKLLLKE 418


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 16/59 (27%), Positives = 25/59 (42%)
 Frame = +3

Query: 138 TPQPEPKIPDVELIVDGFGLMPKSMKVPKNRTSNAFEESKQMLKEIKVTNEEAKSPCSS 314
           TP PEP   ++E + +G        +  KN  S +   S  +L   K+ N  +K    S
Sbjct: 245 TPTPEPSDKNLEKLKNGASKQASESQSLKNMESLSLARSSPILTSEKLKNGASKQAIES 303


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 72  VKMAEEGDEKASGDVEEDTKTVTPQPEP 155
           +K A EGDEK  G V++    +  +P P
Sbjct: 260 IKFAGEGDEKPDGTVQDIQFVLAEKPHP 287


>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
           Cka1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -3

Query: 459 RILRPHHQERLFCQE 415
           R+LR  HQERL CQE
Sbjct: 307 RLLRYDHQERLTCQE 321


>SPAC11D3.09 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 394

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 253 DSSKAFEVRFLGTFIDLGINPNPSTINSTSGI 158
           D S++F++ FLG   D G +  P      SGI
Sbjct: 69  DKSQSFDIAFLGAPFDTGTSYRPGARFGPSGI 100


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 389 IRNYLNTHPIFRSPSVPSNHFN 324
           IRN++ THP ++  SV ++  N
Sbjct: 624 IRNFITTHPSYKQDSVVNDEIN 645


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 87  EGDEKASGDVEEDTKTVTPQPEPK 158
           +GDE+   DVEE  +T++ +P  K
Sbjct: 438 DGDEEVDIDVEETVETISEKPSKK 461


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +3

Query: 42  YISF*NSKFPVKMAEEGDEKASGDVEEDTKTVTPQPEPKIPDVELIVDGFGLMP 203
           YI+  NS   V  A  G    +GD+E+ ++ +   PE       L+V GFG+ P
Sbjct: 102 YITIVNSLLVVCSAF-GSSVIAGDLEDVSRDLKVGPEVANLSCSLMVVGFGIGP 154


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1238

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 606  SGDGLCCLTACTFFPKAAPPLWHP 535
            SG+  C +  CT   K AP  W+P
Sbjct: 1120 SGEVECFMETCTPIAKPAPANWYP 1143


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +3

Query: 201 PKSMKVPKNRTSNAFEESKQMLKEIKVTNEEAKSPCSSSTNIEVV 335
           P  +  PK+ T+N   +S +   + +V +E       S TN  ++
Sbjct: 347 PHGISSPKHSTNNLSSKSGKFHSDFRVVSENVLLQARSETNSPII 391


>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 412

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
 Frame = +3

Query: 87  EGDEKASGDVEEDTKTVTPQPEPKIPDVELIVDGFGLMPKSMKVPKNRTSNAFEESK--- 257
           E  EKA  D+ + +  V P+ E     +   VD F   P   +  +    + + E     
Sbjct: 166 EKSEKAVADLNDSSTDVVPESEVSFQTISSRVDNFFAAPLPSEQAEELIEDDYAEQPEQA 225

Query: 258 --QMLKEIKVTNEEAK 299
             Q +++  ++++EA+
Sbjct: 226 VGQPIEQQSISDDEAR 241


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 17/71 (23%), Positives = 29/71 (40%)
 Frame = +3

Query: 114  VEEDTKTVTPQPEPKIPDVELIVDGFGLMPKSMKVPKNRTSNAFEESKQMLKEIKVTNEE 293
            + E   T  P+P  +   +   V   GL+P S   P   ++     +     E +  ++ 
Sbjct: 1251 IGESKSTRKPRPTKRQRQIMKQV-AEGLLPASAIAPPKSSNEKKSSNNVKAVEAETKSKS 1309

Query: 294  AKSPCSSSTNI 326
             KSP  + TNI
Sbjct: 1310 EKSPKKNGTNI 1320


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 524 CVAPNSSSEIWVSWLEI 474
           C+  N  +E W+SW+ I
Sbjct: 351 CIKHNQHNEKWISWIRI 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,450,121
Number of Sequences: 5004
Number of extensions: 48038
Number of successful extensions: 156
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)