Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20f06
(451 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0425 - 25121344-25121603,25121696-25121838,25122144-251223... 29 1.7
07_03_1452 - 26629219-26629428,26630113-26630280,26630363-266304... 28 3.0
12_02_1279 + 27510605-27513301 28 4.0
03_03_0059 + 14149796-14150350,14152303-14152433,14153479-141535... 27 5.3
11_06_0510 + 24420402-24422582 27 7.0
04_04_0572 - 26321059-26321510,26321629-26321824 27 7.0
11_03_0025 + 9047646-9047958,9048150-9048474,9049833-9051828,905... 27 9.2
02_05_0066 - 25546545-25546999,25547104-25547199,25547294-25547441 27 9.2
02_01_0066 + 482598-483761 27 9.2
>04_04_0425 -
25121344-25121603,25121696-25121838,25122144-25122348,
25122453-25122590,25122999-25123185,25123519-25123852,
25123930-25124018,25124088-25124231,25124514-25124603
Length = 529
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 266 AFLAPAYLCYKKAFWLQGRVGAFEIIYK 183
A LA C KK FW+ GAF I+ +
Sbjct: 201 AVLAMYLFCLKKQFWVSAAFGAFSILLR 228
>07_03_1452 -
26629219-26629428,26630113-26630280,26630363-26630425,
26630499-26630606,26630820-26630932,26631026-26631322,
26631424-26631502,26631733-26631841,26631927-26631968,
26632467-26632597,26633482-26633623,26633713-26633828,
26634121-26634657
Length = 704
Score = 28.3 bits (60), Expect = 3.0
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -3
Query: 278 MHSIAFLAPAYLCYKKAFWLQGRVGAFEIIYKALP 174
M SI +A LC + FW + G F + KA P
Sbjct: 414 MWSIGVIAYILLCGSRPFWARTESGIFRAVLKAEP 448
>12_02_1279 + 27510605-27513301
Length = 898
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +2
Query: 167 PRKAKPYKLSQKRRRGPAARMLFYNTGRLALRRQWNACILCRFN 298
P A Y S R R P A + +TG LAL NA + F+
Sbjct: 122 PDPAADYAWSTPRLRAPVAALRLLDTGELALLDAANATLWSSFD 165
>03_03_0059 +
14149796-14150350,14152303-14152433,14153479-14153520,
14153632-14153740,14154262-14154340,14154437-14154733,
14154820-14154932,14155375-14155482,14155554-14155616,
14155698-14155865,14156283-14156348
Length = 576
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -3
Query: 278 MHSIAFLAPAYLCYKKAFWLQGRVGAFEIIYKALPFLE 165
M SI + LC + FW + G F + KA P E
Sbjct: 334 MWSIGVIVYILLCGSRPFWARTESGIFRAVLKADPSFE 371
>11_06_0510 + 24420402-24422582
Length = 726
Score = 27.1 bits (57), Expect = 7.0
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -1
Query: 169 WNFEISSRWLSWRVRGPLAAPE 104
WNF + + W SWR + + E
Sbjct: 418 WNFRVKTMWDSWRYKTSIGVSE 439
>04_04_0572 - 26321059-26321510,26321629-26321824
Length = 215
Score = 27.1 bits (57), Expect = 7.0
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = +2
Query: 89 RATFSLRCREWSANTPRKPSRRDFEIPRKAKPYKLSQ---KRRRGPAARMLFYNTGRLAL 259
+ +L R A K RR F + + K + SQ GP A MLF +T R+A
Sbjct: 77 KGKLTLGARILQAGGVEKVFRRWFAVGKGEKLLRASQCYLSTTAGPIAGMLFISTERIAF 136
Query: 260 R 262
R
Sbjct: 137 R 137
>11_03_0025 +
9047646-9047958,9048150-9048474,9049833-9051828,
9051991-9052190,9052851-9052899
Length = 960
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +2
Query: 272 NACILCRFNEFDI*NYFQFI---ITIFNYIVRLC 364
+ C L +F+E DI NY ++ IT+ + +V LC
Sbjct: 689 SGCSLPKFHELDIKNYLCWVPRWITMLSSLVHLC 722
>02_05_0066 - 25546545-25546999,25547104-25547199,25547294-25547441
Length = 232
Score = 26.6 bits (56), Expect = 9.2
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = +2
Query: 89 RATFSLRCREWSANTPRKPSRRDFEIPRKAKPYKLSQ---KRRRGPAARMLFYNTGRLAL 259
+ +L R A K R+ F + + K + SQ GP A MLF +T R+A
Sbjct: 93 KGKLTLGARILQAGGVEKVFRQWFSVDKNEKLLRASQCYLSTTAGPIAGMLFVSTERVAF 152
Query: 260 R 262
R
Sbjct: 153 R 153
>02_01_0066 + 482598-483761
Length = 387
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 181 LCLSWNFEISSRWLSWRVRGPLAAPETES 95
LC S++ + RWL R P AAP +S
Sbjct: 264 LCCSYDVPVVRRWLDGLDRLPAAAPPKQS 292
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,033,956
Number of Sequences: 37544
Number of extensions: 195053
Number of successful extensions: 534
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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