Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20f06
         (451 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK125910-1|BAC86341.1|  156|Homo sapiens protein ( Homo sapiens ...    31   1.8  
DQ322802-1|ABC66924.1|  119|Homo sapiens immunoglobulin heavy ch...    29   5.5  
L40357-1|AAA73877.1|  120|Homo sapiens thyroid receptor interact...    29   7.3  

>AK125910-1|BAC86341.1|  156|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43922 fis, clone TESTI4012406, weakly  similar
           to Apolipoprotein(A) (EC 3.4.21.-). ).
          Length = 156

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = +2

Query: 110 CREWSANTPRKPSRRDFEIPRKAKPYKLSQKRRRGPAARMLFYNTGRLALRRQWNACILC 289
           C+ WS+ TP + SR   + P  A  + L  KRR+G    +L        L  Q + C+ C
Sbjct: 78  CQAWSSMTPHQHSRTPEKYP-NAYVFVLYHKRRKGQLKFLL--EESCFELTAQDSTCVRC 134

Query: 290 R 292
           +
Sbjct: 135 K 135


>DQ322802-1|ABC66924.1|  119|Homo sapiens immunoglobulin heavy chain
           variable region EM4-PPS-14-VH3-30 protein.
          Length = 119

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -1

Query: 178 CLSWNFEISSRWLSWRVRGP---LAAPETESSSSKRHYVDVSK 59
           C +  F +SS W+SW  + P   L     +   S+++YVD  K
Sbjct: 22  CAASGFTLSSYWMSWVRQAPGKGLEVANIKQDGSEKYYVDSVK 64


>L40357-1|AAA73877.1|  120|Homo sapiens thyroid receptor interactor
           protein.
          Length = 120

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +2

Query: 59  FTNINIMPF*RATFSLRCREWSANTPRKPSRRDFEIPRKAKPYKLSQKRRRGPAAR 226
           FT+I IMP  ++  +   ++ S  T ++P+RR   +  K  P K   K R+  A +
Sbjct: 16  FTDIVIMPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKK 71


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,028,115
Number of Sequences: 237096
Number of extensions: 1151863
Number of successful extensions: 2970
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2970
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3701294870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)