Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20f06
         (451 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81131-2|CAB03425.1|  349|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z92786-4|CAB07206.1|  553|Caenorhabditis elegans Hypothetical pr...    27   4.8  
Z82071-2|CAB04918.2|  362|Caenorhabditis elegans Hypothetical pr...    27   6.3  
L07144-9|AAK21441.1|  737|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>Z81131-2|CAB03425.1|  349|Caenorhabditis elegans Hypothetical
           protein T24D1.3 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +2

Query: 134 PRKPSRRDFEIPRKAKPYKLSQKRRRGPAARMLFYNTGRLALRRQWNACILCRFN 298
           P  P+ +    P   +P   SQ+R    +  +  ++TG L LRR+ +A I  R +
Sbjct: 121 PAAPNTQPEVPPTVQQPESSSQERASPTSPEITIFSTGLLGLRRRSSARISIRMS 175


>Z92786-4|CAB07206.1|  553|Caenorhabditis elegans Hypothetical
           protein F47H4.7 protein.
          Length = 553

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +3

Query: 81  LFEELLSVSGAASGPRTRHESHLDEISKFQERQSLINYLKSADAALQPE 227
           +  EL S S  + GP  RH    D+   + + + LI  LK      + E
Sbjct: 136 IVRELNSQSANSPGPSARHHDKDDDFPAYNQLKELIQKLKDKQTPAKAE 184


>Z82071-2|CAB04918.2|  362|Caenorhabditis elegans Hypothetical
           protein W05B5.2 protein.
          Length = 362

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 8/24 (33%), Positives = 19/24 (79%)
 Frame = +2

Query: 320 FQFIITIFNYIVRLCEVSVLCIYI 391
           +Q + TIF++++ L  +S+LC+++
Sbjct: 213 YQLLQTIFSFVLPLLVISILCLHM 236


>L07144-9|AAK21441.1|  737|Caenorhabditis elegans Hypothetical
           protein R05D3.2 protein.
          Length = 737

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 113 REWSANTPRKPSRRDFEIPRKAKPYKLSQKRRR 211
           R+W  + P+KP   +F+  R  K Y    +R+R
Sbjct: 400 RKWDKDVPKKPKNPNFDY-RNLKEYVKEARRQR 431


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,979,631
Number of Sequences: 27780
Number of extensions: 178611
Number of successful extensions: 459
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)