Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20f06
         (451 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   8.2  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   8.2  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   8.2  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 29  YFHYKSRQYNFTNINIMP 82
           Y +YK   YN  NI  +P
Sbjct: 346 YNNYKKLYYNIINIEQIP 363


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +1

Query: 91  SYFQSPVPRVVREHATKAISTRFRNSKK 174
           SY++  +  V+R   T+A++  F++  K
Sbjct: 71  SYWRGNLANVIRYFPTQALNFAFKDKYK 98


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +1

Query: 91  SYFQSPVPRVVREHATKAISTRFRNSKK 174
           SY++  +  V+R   T+A++  F++  K
Sbjct: 71  SYWRGNLANVIRYFPTQALNFAFKDKYK 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,136
Number of Sequences: 438
Number of extensions: 2322
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)