Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20f03
         (156 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    23   4.1  
SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|c...    23   5.4  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    22   9.5  

>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 66  STLASMTELVYQAGCSAPP 122
           +T +S+TEL Y    S PP
Sbjct: 691 TTKSSLTELAYNTNVSLPP 709


>SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 334

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 129 PPPGGRSTLLDRRAPSLRPTLNGVEV 52
           P PG  STL +R  PSL  TL+ V +
Sbjct: 141 PKPG--STLYERFIPSLNETLSFVSL 164


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 47  KMTSTPFNVGLN 82
           K TSTPF +G N
Sbjct: 344 KRTSTPFTIGYN 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 566,337
Number of Sequences: 5004
Number of extensions: 6767
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 32
effective length of database: 2,202,350
effective search space used: 41844650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)