Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20f03
         (156 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0044 + 18570501-18570654,18571384-18572435                       26   3.6  
01_06_0556 + 30207124-30207581,30207692-30207901,30208016-302081...    26   3.6  
01_02_0108 - 11200964-11201338                                         26   4.8  
03_03_0246 + 15789635-15794227,15794314-15794555,15794630-157947...    25   6.3  
02_03_0265 + 17066253-17066501,17067102-17068121                       25   8.3  
01_06_1683 - 39134826-39135664,39136202-39136278,39136391-391364...    25   8.3  

>11_05_0044 + 18570501-18570654,18571384-18572435
          Length = 401

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 71  VGLNDGARLSSRVLRPPGGGHTN 139
           VGL  G  + + VLR  GGGH +
Sbjct: 370 VGLGPGLTIETIVLRATGGGHVD 392


>01_06_0556 +
           30207124-30207581,30207692-30207901,30208016-30208100,
           30208517-30208676,30208768-30208844,30208985-30209032,
           30209504-30209594,30209703-30210004,30210214-30210495,
           30210695-30211011,30211113-30211273,30211556-30211665,
           30211752-30211902,30212438-30212578,30212688-30212857,
           30213485-30213817,30213981-30214271,30214356-30214439,
           30214620-30214753,30214946-30215173,30215273-30215444,
           30215621-30215875,30215963-30216232
          Length = 1509

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 153 SESKMLVWPPPGGRSTLLDRRAPSLRPTL 67
           S   +L+ PP  G++TLL   A  L PTL
Sbjct: 222 SRMTLLLGPPSSGKTTLLLALAGKLDPTL 250


>01_02_0108 - 11200964-11201338
          Length = 124

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 50  MTSTPFNVGLNDGARLSSRVLRPPGGGHTNIF 145
           M ST  NVGL+  A  +S ++RP  G    +F
Sbjct: 1   MASTLTNVGLSTPAAAASSLVRPVAGAGRVVF 32


>03_03_0246 + 15789635-15794227,15794314-15794555,15794630-15794771,
            15796089-15796272,15796349-15796696,15796753-15797450,
            15798208-15798900
          Length = 2299

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 41   KNKMTSTPFNVGLNDGARLSSRVL 112
            K    STPFN+G  D ++L+ +V+
Sbjct: 1638 KTMPISTPFNIGTWDNSQLNQQVM 1661


>02_03_0265 + 17066253-17066501,17067102-17068121
          Length = 422

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 66  STLASMTELVYQAGCSAPPVVATLTSS 146
           S L       + A   APPV+AT T+S
Sbjct: 8   SRLLGSASAAFSAQAEAPPVIATATAS 34


>01_06_1683 -
           39134826-39135664,39136202-39136278,39136391-39136441,
           39136581-39136654,39136782-39136870,39137152-39137234,
           39138067-39138241,39138348-39138501
          Length = 513

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 60  HHSTLASMTELVYQAGCSAPPVVATL 137
           HHS  A+   + +QA  + PP  A L
Sbjct: 317 HHSAAAAWPTIAFQAAAAPPPHAAGL 342


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,082,121
Number of Sequences: 37544
Number of extensions: 53806
Number of successful extensions: 201
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 14,793,348
effective HSP length: 32
effective length of database: 13,591,940
effective search space used: 258246860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)