Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20f03
         (156 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032623-15|CAJ76975.1|  260|Caenorhabditis elegans Hypothetical...    25   9.6  
AL032623-2|CAD54165.1|  312|Caenorhabditis elegans Hypothetical ...    25   9.6  
AL032623-1|CAA21508.2|  309|Caenorhabditis elegans Hypothetical ...    25   9.6  

>AL032623-15|CAJ76975.1|  260|Caenorhabditis elegans Hypothetical
           protein Y43F8B.1c protein.
          Length = 260

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 135 VWPPPGGRSTLLD 97
           VWPPP   STL D
Sbjct: 166 VWPPPENESTLSD 178


>AL032623-2|CAD54165.1|  312|Caenorhabditis elegans Hypothetical
           protein Y43F8B.1b protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 135 VWPPPGGRSTLLD 97
           VWPPP   STL D
Sbjct: 215 VWPPPENESTLSD 227


>AL032623-1|CAA21508.2|  309|Caenorhabditis elegans Hypothetical
           protein Y43F8B.1a protein.
          Length = 309

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 135 VWPPPGGRSTLLD 97
           VWPPP   STL D
Sbjct: 215 VWPPPENESTLSD 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,256,647
Number of Sequences: 27780
Number of extensions: 40640
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 12,740,198
effective HSP length: 32
effective length of database: 11,851,238
effective search space used: 225173522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)