Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20f03
         (156 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   0.46 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   1.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   1.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          20   3.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      20   3.2  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          19   4.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      19   4.3  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    19   4.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    19   7.4  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    18   9.8  
AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    18   9.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 0.46
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 156  GSESKMLVWPPPGGRSTLLDRRAPSLRPTL 67
            GS+   +V+   G     LD+R P LR  L
Sbjct: 1614 GSDKDDVVYQQTGVGGATLDKRRPDLRDEL 1643



 Score = 18.2 bits (35), Expect = 9.8
 Identities = 12/46 (26%), Positives = 19/46 (41%)
 Frame = -1

Query: 156 GSESKMLVWPPPGGRSTLLDRRAPSLRPTLNGVEVILFFYLSLHTS 19
           G+ +  + W   G R +  +R       T+NG  V      S HT+
Sbjct: 419 GNPTPEITWELDGKRLSNTERLQVGQYVTVNGDVVSHLNISSTHTN 464


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 105  GCSAPPVVATLTSSI 149
            GC++PP  AT   S+
Sbjct: 1750 GCASPPPAATSMKSV 1764


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 105  GCSAPPVVATLTSSI 149
            GC++PP  AT   S+
Sbjct: 1746 GCASPPPAATSMKSV 1760


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 102 LDRRAPSLRPTLNGVE 55
           +DR A +LRP  N +E
Sbjct: 545 MDRFAVTLRPGSNSIE 560


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 102 LDRRAPSLRPTLNGVE 55
           +DR A +LRP  N +E
Sbjct: 545 MDRFAVTLRPGSNSIE 560


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 72  TLNGVEVILFFYLSLHTSLLXD 7
           T+N +E    FY  + TSL  D
Sbjct: 567 TMNDLEPSEIFYEKIETSLNSD 588


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 72  TLNGVEVILFFYLSLHTSLLXD 7
           T+N +E    FY  + TSL  D
Sbjct: 567 TMNDLEPSEIFYEKIETSLNSD 588


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
          monooxygenase protein.
          Length = 517

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 5/12 (41%), Positives = 11/12 (91%)
 Frame = -3

Query: 46 VLLFITSHKSSF 11
          +L+F+TSH+ ++
Sbjct: 18 ILIFVTSHRPAW 29


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = -1

Query: 111 STLLDRRAPS 82
           S+++DRR+PS
Sbjct: 30  SSIVDRRSPS 39


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 6   RXKEDLCEVINK 41
           + KED+ EVI K
Sbjct: 169 KAKEDVIEVIQK 180


>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 111 STLLDRRAPSLRPTLNGVE 55
           + L D+RAP+    + G E
Sbjct: 23  NVLFDKRAPTGHQEMQGKE 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,315
Number of Sequences: 438
Number of extensions: 511
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 31
effective length of database: 132,765
effective search space used:  2655300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)